New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1205383 =	84 (1.050)	36 (0.550) +TTCCTAGGGTGCCGTCTCAGCCTCG	6/218	9.2	41.5%	intergenic (+519/‑305)	yfiE/lspA	possible lactoylglutathione lyase/A8 family signal peptidase II
	?	CP000730	2478476 =	41 (0.510)					intergenic (+363/+708)	USA300HOU_2340/htrB	hypothetical membrane protein/hemin ABC superfamily ATP binding cassette transporter, ABC protein
Rejected: Coverage evenness skew score above cutoff.

TGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAAT  >  CP000730/2478337‑2478615                                                                                                                                            |                                                                                                                                            tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGt                                                                                                                                            >  1:462868/1‑141 (MQ=35)  gCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTc                                                                                                                                           <  2:441837/141‑1 (MQ=35)  gCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTc                                                                                                                                           >  1:401832/1‑141 (MQ=35)      aTCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCg                                                                                                                                       >  2:790755/1‑141 (MQ=33)        cTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGAc                                                                                                                                     <  2:490246/141‑1 (MQ=32)         tGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCTCCTGTCTTCGACt                                                                                                                                    >  2:822552/1‑141 (MQ=17)           gCACATTCCTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTgg                                                                                                                                  <  1:533877/141‑1 (MQ=11)                                                                          ctcAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAAt                                                                   >  2:546118/1‑141 (MQ=32)                                                                          ctcAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAAt                                                                   <  1:985853/141‑1 (MQ=32)                                                                          ctcAGCCACCCCAAACGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCACTGTCTTCGACTGGCACTGCTCACTCCGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAAt                                                                   >  2:874959/1‑141 (MQ=255)                                                                             aGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACt                                                                >  2:575716/1‑141 (MQ=32)                                                                               ccatcccAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACttt                                                              >  2:637852/5‑141 (MQ=25)                                                                                  ccccAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACTTNTTAACAGGTAATTTTACTTTTAAATACTTTaaa                                                           <  1:790755/141‑1 (MQ=25)                                                                                      aaCCGGCACATTGTTGTAAGCTGACTATACGTCAGCTTCTGTGTTGGGGCCCCTGCCTTCGCCTGGCACTGCCCCCTCAGGCGTCTCGCCATTAATACTACGTATTAACATGTAATCTTACTTTTAAATACTTTacaacaa                                                       >  2:428515/1‑141 (MQ=11)                                                                                        ccGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATa                                                     >  1:601914/1‑141 (MQ=40)                                                                                         cGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATaa                                                    <  1:581090/141‑1 (MQ=255)                                                                                             acaTTGTTGTAAGCTGACTATATGTCAGCTCCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAACAAAATAAGaca                                                >  2:788889/1‑141 (MQ=255)                                                                                                 tgttgtAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACttt                                            >  1:458700/1‑141 (MQ=255)                                                                                                      tAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGTACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCa                                       <  2:308814/141‑1 (MQ=255)                                                                                                      tAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCa                                       >  1:675236/1‑141 (MQ=255)                                                                                                      tAAGCTGACTATATGTCAGCTTCAGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTCTTAAATACTTTCAAAAAATAAGACACTTTGGccc                                       >  2:877221/1‑140 (MQ=255)                                                                                                               tataTGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGcc                              <  1:178804/141‑1 (MQ=255)                                                                                                                tatagTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAACTAAGACACTTTGGAACACTTCAGccg                             >  2:799995/5‑140 (MQ=14)                                                                                                                atatGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCa                             >  2:928184/1‑141 (MQ=255)                                                                                                                   tGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGa                          <  2:60687/141‑1 (MQ=255)                                                                                                                    gTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGAt                         <  2:86344/141‑1 (MQ=255)                                                                                                                        gcctttgggtTGGGGCCCCCGTCTTCGACCGGCACCGCCCCCTCAAGAGGCATGCATGTAATACCTCCGATTAACATGTTATTTTTCTTTTAAAAACCTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACaa                     <  1:826265/133‑1 (MQ=12)                                                                                                                        gCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTaa                                                                     <  1:390004/93‑1 (MQ=33)                                                                                                                        gCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTaa                                                                     >  2:390004/1‑93 (MQ=33)                                                                                                                             tgtgTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTAc                >  2:767961/1‑141 (MQ=255)                                                                                                                             tgtgTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTAc                >  2:572296/1‑141 (MQ=255)                                                                                                                             tgtgTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTAc                >  1:740028/1‑141 (MQ=255)                                                                                                                              gtgtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGTAAAGATACAATTTACa               >  1:566493/1‑141 (MQ=255)                                                                                                                                gtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACaaa             >  1:859596/1‑141 (MQ=255)                                                                                                                                   ggggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAg          <  1:546118/141‑1 (MQ=255)                                                                                                                                    gggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATaa                                                    >  1:358345/1‑98 (MQ=39)                                                                                                                                    gggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATaa                                                    <  2:358345/98‑1 (MQ=39)                                                                                                                                      gCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGa       <  2:993778/141‑1 (MQ=255)                                                                                                                                       ccccTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGAc      <  1:306416/141‑1 (MQ=255)                                                                                                                                         ccTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACaa    >  1:476699/1‑141 (MQ=255)                                                                                                                                           tGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAAt  <  1:315465/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            TGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAAT  >  CP000730/2478337‑2478615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.