| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 920377 = | 73 (0.920) | 3 (0.040) | 3/242 | 12.3 | 4.4% | coding (52/135 nt) | USA300HOU_0880 | hypothetical protein |
| ? | CP000730 | 920443 = | 65 (0.910) | coding (6/99 nt) | USA300HOU_0881 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTTAGTTTGATGTTTTTGCTTGATTAAAATCTTTCGGCGATCTTCAGCTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/920528‑920377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtggattgcgTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGACATTGGTGATA > CP000730/920443‑920580 CTTTAGTTTGATGTACGGGCTTGATTAAAATCTTTCGGCGATCTTCAGCTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTT < 1:49733/141‑1 TTTAGTTTGATGTTTTTGCTTGATTAAAATCTTTCGGCGATCTTCAGCTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTT < 2:891946/141‑1 TAGTTTGATGTTTTTGCTTGATTAAAATCTTTCGGCGATCTTCAGCTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGT > 2:499012/1‑141 GTTTGATGTTTTTGCTTGATTAAAATCTTTCGGCGATCTTCAGCTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGG > 2:523624/1‑141 TTTGATATTTTTTCTTGATTAAAATCTTTCGGCGATCTTCAGCTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGTGGTGCTTGTGCTTTTGTGGA < 2:554618/141‑1 GATGTGTTTGCGTGATTAAAATCTTTCGGCGATCTTCAGCTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGTGGTGCTTGTGCTTTTGTGGATTG < 2:573706/141‑1 GTTTTTGCTTGATTAAAATCTTTCGGCGATCTTCAGCTTGATGTTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCG > 1:465468/1‑141 CTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTG > 1:375439/1‑97 CTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTG < 2:375439/97‑1 AAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCACTTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGAAAAAACATCAAACTAAA > 2:770100/1‑141 GGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGC > 2:363469/1‑141 GCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAA > 1:692949/1‑141 TTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGA < 2:484626/141‑1 TTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGA < 1:417079/141‑1 TTTTGTGGATTGCATTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGAAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGA < 2:472654/141‑1 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGAC > 1:531699/1‑141 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATAAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGAC < 2:355396/141‑1 TTGTGGATTGCGTTTCTATTTTACCACTTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGACA < 2:726227/141‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGACATT < 1:246777/141‑1 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGACATTGG < 1:107713/141‑1 GATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGACATTGGT > 1:1167/1‑141 TTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGACATTGGTGA < 1:440560/141‑1 GCGTTTCTATTTTACCAATATAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGACATTGGTGATA < 2:455564/141‑1 CTTTAGTTTGATGTTTTTGCTTGATTAAAATCTTTCGGCGATCTTCAGCTTGATG‑TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/920528‑920377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtggattgcgTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGATGACATTGGTGATA > CP000730/920443‑920580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |