| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1623534 = | 34 (0.990) | 3 (0.100) | 3/248 | 5.1 | 8.7% | intergenic (+19/+64) | graE/malA | AraC family transcriptional regulator/alpha‑glucosidase |
| ? | CP000730 | 1623587 = | 32 (1.020) | intergenic (+72/+11) | graE/malA | AraC family transcriptional regulator/alpha‑glucosidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCTATTTAATTATGATGCCAAAGTTAATTTAAAACAGTTACGTCCATATGAAGCATGTGTTATCGAACTAAATTAACATATTAATATGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1623674‑1623534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattagggggcATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCTTTACTTCTCCATGGCTTAAATCAAATGGTACAGTTAATTCTGC > CP000730/1623587‑1623717 AGCTATTTAATTATGATGCCAAAGTTAATTTAAAACAGTTACGTCCATATGAAGCATGTGTTATCGAACTAAATTAACATATTAATATGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGC > 2:155268/1‑141AGCTATTTAATTATGATGCCAAAGTTAATTTAAAACAGTTACGTCCATATGAAGCATGTGTTATCGAACTAAATTAACATATTAATATGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGC < 1:55138/141‑1 TATGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATGAAATA > 2:143621/1‑141 AGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCTTTACTTCTCC > 1:144280/1‑141 GAATCTAAGACCATTTGTAGACCTATAGATATATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCTTTACTTCTCCA > 1:280423/1‑141 TATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCTTTACTTCTCCATGGCTTAAATCAAATGGTACAGTTAATTCTG < 2:11686/141‑1 TATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCTTTACTTCTCCATGGCTTAAATCAAATGGTACAGTTAATTCTG > 2:157556/1‑141 ATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCTTTACTTCTCCATGGCTTAAATCAAATGGTACAGTTAATTCTGC < 2:144280/141‑1 AGCTATTTAATTATGATGCCAAAGTTAATTTAAAACAGTTACGTCCATATGAAGCATGTGTTATCGAACTAAATTAACATATTAATATGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1623674‑1623534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattagggggcATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCTTTACTTCTCCATGGCTTAAATCAAATGGTACAGTTAATTCTGC > CP000730/1623587‑1623717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |