New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	940816 =	83 (0.940)	5 (0.060)	4/246	NT	5.6%	coding (372/375 nt)	comA	hypothetical protein
	?	CP000730	940879 =	90 (1.070)					coding (1151/1155 nt)	USA300HOU_0905	hypothetical protein

CATTTGGTAGAAATGTTATGGGTGGCCGTAAAGCTGCCGAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/940960‑940816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttatGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAATTCTAAGTCTGCAAAGCATCCTGCGACAAATAGATTTGGTATCCATTCTAA  >  CP000730/940879‑941018                                                                                                                                                                                                                                                                                               CATTTGGTAGAAATGTTATGGGTGGCCGTAAAGCTGCCGAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTT                                                                                                                                                  >  1:817026/1‑141  ATTTGGTAGAAATGTTATGGGTGGCCGTAAAGCTGCCGAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTT                                                                                                                                                 <  1:580599/141‑1   TTTGGTAGAAATGTTATGGGTGGCCGTAAAGCTGCCGAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTT                                                                                                                                                <  1:440680/141‑1         AGAAATGTTATGGGTGGCCGTAAAGCTGCCGAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATctta                                                                                                                                          <  1:34023/141‑5                                                                                    TAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTCCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAA                                                               >  1:934707/1‑141                                                                                    TAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTCCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAA                                                               >  1:934702/1‑141                                                                                                TAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGC                                                                                               >  2:825309/1‑97                                                                                                TAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGC                                                                                               <  1:825309/97‑1                                                                                                                      ATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAATTCTAAGTCTGCAAAGCATCCTGC                             >  1:517666/1‑141                                                                                                                                              TTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAATTCTAAGTCTGCAAAGCATCCTGCGACAAATAGATTTGGTATCCATTC     <  1:599309/141‑1                                                                                                                                              TTATGCGCTATATTGTTGTACTTTTAGCACTGACTTTTTAATGCTTTTGTCATCTTTACGGCCACTCATAACATTTCTACCAAATGGTCCTAATTCTAAGTCTGCAAAGCATCCTGCGACAAATAGATTTGGTATCCATTC     <  1:754044/141‑1                                                                                                                                               TATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAATTCTAAGTCTGCAAAGCATCCTGCGACAAATAGATTTGGTATCCATTCT    >  1:540807/1‑141                                                                                                                                               TATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAATTCTAAGTCTGCAAAGCATCCTGCGACAAATAGATTTGGTATCCATTCT    <  2:146721/141‑1                                                                                                                                                 TGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAATTCTAAGTCTGCAAAGCATCCTGCGACAAATAGATTTGGTATCCATTCTAA  >  1:1016385/1‑141                                                                                                                                                                                                                                                                                               CATTTGGTAGAAATGTTATGGGTGGCCGTAAAGCTGCCGAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/940960‑940816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttatGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAATTCTAAGTCTGCAAAGCATCCTGCGACAAATAGATTTGGTATCCATTCTAA  >  CP000730/940879‑941018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.