| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1843478 | 53 (0.600) | 3 (0.040) | 3/240 | NT | 5.4% | intergenic (‑162/‑220) | tyrS/sgtA | tyrosine‑‑tRNA ligase/possible transglycosylase |
| ? | CP000730 | = 1843483 | 55 (0.670) | intergenic (‑167/‑215) | tyrS/sgtA | tyrosine‑‑tRNA ligase/possible transglycosylase | |||||
ATAATTATTTATTGAATACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1843335‑1843478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattaatga‑ACGTATCATTAATAGAGTGAACATTATCTTATGATTATGTTTAAGTTTGGTGGTAACGTGCAATCGCGCCCTTACATATTTGTTGTAAGGGTTTTTTTTACGTTCAAAAAACTTTAAAGTATTTTAACAAGTATTC < CP000730/1843483‑1843348 ATAATTATTTATTGAATACTTGTTAAAACACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTGCCACGAATCTTAAACATAATCATAAGATAATGTTCACTCTATTAA < 2:894497/141‑1 AATTATTTATTGAATACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAATCCTTACAACAAATATGTAAGTTCGCGATTGCACGTTACTACCAAACTTAAACATAATCATAAGATAATGTTAACTCTATTAATa > 2:467979/1‑140 ATTGAATACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGA‑ACGTATC < 2:15761/141‑1 CGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGT‑TCATTAATAGAGTGAACATTATCTTATGATTATGTTTAAGTTTGGTGGTAACGTGCAATCGCGCCCTTACATATTTGTTGTAA > 2:998841/1‑141 AAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGT‑TCATTAATAGAGTGAACATTATCTTATGATTATGTTTAAGTTTGGTGGTAACGTGCAATCGCGCCCTTACATATTTGTTGTAAGGGTTTTTTT > 1:456620/1‑141 TATTAATGA‑ACGTATCATTAATAGAGTGAACATTATCTTATGATTATGTTTAAGTTTGGTGGTAACGTGCAATCGCGCCCTTACATATTTGTTGTAAGGGTTTTTTTTACGTTCAAAAAACTTTAAAGTATTTTAACAAGT > 1:396835/1‑141 TTAATGA‑ACGTATCATTAATAGAGTGAACATTATCTTATGATTATGTTTAAGTTTGGTGGTAACGTGCAATCGCGCCCTTACATATTTGTTGTAAGGGTTTTTTTTACGTTCAAAAAACTTTAAAGTATTTTAACAAGTAT > 2:442943/1‑141 AATGA‑ACGTATCATTAATAGAGTGAACATTATCTTATGATTATGTTTAAGTTTGGTGGTAACGTGCAATCGCGCCCTTACATATTTGTTGTAAGGGTTTTTTTTACGTTCAAAAAACTTTAAAGTATTTTAACAAGTATTC < 1:979519/141‑1 AATGA‑ACGTATCATTAATAGAGTGAACATTATCTTATGATTATGTTTAAGTTTGGTGGTAACGTGCAATCGCGCCCTTACATATTTGTTGTAAGGGTTTTTTTTACGTTCAAAAAACTTTAAAGTATTTTAACAAGTATTC < 1:720698/141‑1 ATAATTATTTATTGAATACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1843335‑1843478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattaatga‑ACGTATCATTAATAGAGTGAACATTATCTTATGATTATGTTTAAGTTTGGTGGTAACGTGCAATCGCGCCCTTACATATTTGTTGTAAGGGTTTTTTTTACGTTCAAAAAACTTTAAAGTATTTTAACAAGTATTC < CP000730/1843483‑1843348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |