New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2336425 =	69 (0.780)	8 (0.100)	8/236	NT	12.0%	intergenic (‑145/+75)	USA300HOU_2192/npdA	hypothetical protein/possible aldo/keto reductase
	?	CP000730	2336465 =	54 (0.670)					intergenic (‑185/+35)	USA300HOU_2192/npdA	hypothetical protein/possible aldo/keto reductase

AGTAATAGCCAATTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACTTGGATGTTAAAGTCTATGTTTCAGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2336574‑2336425 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATC  >  CP000730/2336465‑2336604                                                                                                                                                                                                                                                                                                    AGTAATAGCCAATTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACTTGGATGTTAAAGTCTATGT                                                                                                                                                       >  2:643098/1‑141      TAGCCAATTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACTTGGATGTTAAAGTCTATGTTTCAG                                                                                                                                                  <  2:713913/141‑1       AGCCAATTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACTTGGATGTTAAAGTCTGTGTTTCAGG                                                                                                                                                 <  2:532200/141‑1       AGCCAATTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACTTGGATGTTAAAGTCTATGTTTCAGG                                                                                                                                                 >  1:266222/1‑141        GCCAATTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGGAACTTGGATGTTAAAGTCTATGTTTCAGGT                                                                                                                                                >  1:3213/1‑141        GCCAATTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAACCATTTACATTACACTAACCTGAAACTTGGATGTTAAAGTCTATGTTTCAGGT                                                                                                                                                <  1:1061689/141‑1             TTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTG                                                                                                                                           <  2:199405/141‑1                  CTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATG                                                                                                                                      <  1:768323/141‑1                         GCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGA                                                                                                                               <  1:746470/141‑1                                                                                                                 ACCTGAAACTTGGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGC                                       >  1:962430/1‑141                                                                                                                     GAAACTTGGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATT                                   >  2:464790/1‑141                                                                                                                         CTTGGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTT                               >  1:837291/1‑141                                                                                                                          TTGGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTT                              >  2:738899/1‑141                                                                                                                            GGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCT                            >  1:768938/1‑141                                                                                                                            GGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCT                            >  2:419023/1‑141                                                                                                                                            GTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAATTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTT            >  1:758839/1‑141                                                                                                                                            GTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTT            <  2:427276/141‑1                                                                                                                                             TTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTG           <  1:1087025/141‑1                                                                                                                                             TTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTG           <  2:502714/141‑1                                                                                                                                                 AGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGT       >  1:661737/1‑141                                                                                                                                                  GGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTT      >  1:220262/1‑141                                                                                                                                                  GGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTT      <  1:581929/141‑1                                                                                                                                                    TTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTA    <  1:199405/141‑1                                                                                                                                                      AGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATt  >  2:824748/1‑140                                                                                                                                                      AGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATC  <  2:674716/141‑1                                                                                                                                                      AGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATC  <  2:410258/141‑1                                                                                                                                                                                                                                                                                                    AGTAATAGCCAATTTTTCTCACATGCTGATCCAGAGATGATTAAAGCACTTACAAGCAGAGAATTAGATGTTTAATCATAATATAACAAAGTAAATCATTTACATTACACTAACCTGAAACTTGGATGTTAAAGTCTATGTTTCAGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2336574‑2336425 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATC  >  CP000730/2336465‑2336604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.