New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2419233	89 (1.000)	3 (0.040)	3/240	NT	3.5%	intergenic (‑71/‑177)	odh/USA300HOU_2284	D‑octopine dehydrogenase/hypothetical membrane protein
	?	CP000730	= 2419242	83 (1.010)					intergenic (‑80/‑168)	odh/USA300HOU_2284	D‑octopine dehydrogenase/hypothetical membrane protein
Rejected: Frequency below/above cutoff threshold.

ACATCGTGGCCTTTGCTCACCATATCTACTGCTGCCGTAACTGCGCCATTTCCTGATCCTACAATTGCTATTTTCATAAACAACCCTCTTTCTATCTTTGGTTAAAATTAAAAACAAATTATACGTAAGACAATATAAAAATGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2419086‑2419233 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgatgcgTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAGATATGG  <  CP000730/2419242‑2419105                                                                                                                                                                                                                                                                                                 ACATCGTGGCCTTTGCTCACCATATCTACTGCTGCCGTAACTGCGCCATTTCCTGATCCTACAATTGCTATTTTCATAAACAACCCTCTTTCTATCTTTGGTTAAAATTAAAAACAAATTATACGTAAGACAATATAAAAA                                                                                                                                                    >  1:734688/1‑141    TCGTGGCCTTTGCTCACCATATCTACTGCTGCCGTAACTGCGCCATTTCCTGATCCTACAATTGCTATTTTCATAAACAACCCTCTTTCTATCTTTGGTTAAAATTAAAAACAAATTATACGTAAGACAATATAAAAATGA                                                                                                                                                 >  1:438124/1‑141     CGTGGCCTTTGCTCACCATATCTACTGCTGCCGTAACTGCGCCATTTCCTGATCCTACAATTGCTATTTTCATAAACAACCCTCTTTCTATATAAAAAAAAAAAAAAAAACAAATTATACGTAAGACAATATAAAAATGAT                                                                                                                                                <  2:70151/141‑1      GTGGCCTTTGCTCACCATATCTACTGCTGCCGTAACTGCGCCATTTCCTGATCCTACAATTGCTATTTTCATAAACAACCCTCTTTCTATCTTTGGTTAAAATTAAAAACAAATTATACGTAAGACAATATAAAAATGATG                                                                                                                                               >  1:110301/1‑141               GCTCACCATATCTACTGCTGCCGTAACTGCGCCATTTCCTGATCCTACAATTGCTATTTTCATAAACAACCCTCTTTCTATCTTTGGTTAAAATTAAAAACAAATTATACGTAAGACAATATAAAAATGATGCGTAATGAA                                                                                                                                      <  1:26817/141‑1                                                                                                       TAAAATTAAAAACAAATTATACGTAAGACAATATAAAAATGATGCGAATTCATTA‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAATCTAAGATAGAAAGAGGGTTGTTTTTGATAATATCAATT                                             >  2:602146/1‑141                                                                                                                        TATACGTAAGACAATATAAAAATGATGCG‑AATTCATTACGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGG                            >  1:696574/1‑141                                                                                                                                            AATGATGGATAATGAATT‑CGCATCTTTTTTATATTGTCTTACGTATAATTTGTTTTTATTTTTAACCAAAGATAGAAAGAGCGTGGTTTATGAAAATAGCAATTGGAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAG        <  2:93499/141‑1                                                                                                                                            AATGATGCGTAATGAATT‑CGCATCATTTTTATATTGTTTTGCGGATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATGAGGAAATGGCGCAGTTACGGCAGCAGTAG        <  2:970975/141‑1                                                                                                                                            AATGATGCGTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAG        <  1:998272/141‑1                                                                                                                                            AATGATGCGTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAG        <  1:1022183/141‑1                                                                                                                                            AATGATGCGTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAG        <  2:429850/141‑1                                                                                                                                            AATGATGCGTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAG        <  1:219659/141‑1                                                                                                                                            AATGATGCGTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAG        >  1:838798/1‑141                                                                                                                                             ATGATGCGTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAGA       >  2:144422/1‑141                                                                                                                                               GATGCGTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAGATA     >  2:476819/1‑141                                                                                                                                                  GCGTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAGATATGG  <  1:526771/141‑1                                                                                                                                                                                                                                                                                                 ACATCGTGGCCTTTGCTCACCATATCTACTGCTGCCGTAACTGCGCCATTTCCTGATCCTACAATTGCTATTTTCATAAACAACCCTCTTTCTATCTTTGGTTAAAATTAAAAACAAATTATACGTAAGACAATATAAAAATGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2419086‑2419233 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgatgcgTAATGAATT‑CGCATCATTTTTATATTGTCTTACGTATAATTTGTTTTTAATTTTAACCAAAGATAGAAAGAGGGTTGTTTATGAAAATAGCAATTGTAGGATCAGGAAATGGCGCAGTTACGGCAGCAGTAGATATGG  <  CP000730/2419242‑2419105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.