| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2519257 = | 106 (1.200) | 3 (0.040) | 3/246 | NT | 2.9% | coding (1375/3690 nt) | narG | nitrate reductase alpha subunit |
| ? | CP000730 | 2519287 = | 98 (1.160) | coding (1345/3690 nt) | narG | nitrate reductase alpha subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACATTATCAATGACAGAAGGTGGATACGAATTAGAAACAATTCAATTCCCATACTTTGATAGTGATGGAGATGGGATATTCAATCGTCCAATTCCAACTCGACAAGTCACTTTAGCAAATGGTGACAAAGTCCGTATTGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2519398‑2519257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctaAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGGTTAATTTTAGAACCATCTTCTGTT > CP000730/2519287‑2519426 ACATTATCAATGACAGAAGGTGGATACGAATTAGAAACAATTCAATTCCCATACTTTGATAGTGATGGAGATGGGATATTCAATCGTCCAATTCCAACTCGACAAGTCACTTTAGCAAATGGTGACAAAGTCCGTATTGCT < 2:175410/141‑1ACATTATCAATGACAGAAGGTGGATACGAATTAGAAACAATTCAATTCCCATACTTTGATAGTGATGGAGATGGGATATTCAATCGTCCAATTCCAACTCGACAAGTCACTTTAGCAAATGGTGACAAAGTCCGTATTGCT < 2:418900/141‑1ACATTATCAATGACAGAAGGTGGATACGAATTAGAAACAATTCAATTCCCATACTTTGATAGTGATGGAGATGGGATATTCAATCGTCCAATTCCAACTCGACAAGTCACTTTAGCAAATGGTGACAAAGTCCGTATTGCT < 2:1058894/141‑1 AAGTCACTTTAGCAAATGGTGACAAAGTCCGTATTGCTAAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCATATCCACCTTCTGTCA > 2:203950/1‑141 CACTTTAGCAAATGGTGACAAAGTCCGTATTGCTAAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGA > 1:1039505/1‑141 AATGGTGACAAAGTCCGTATTGCTAAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGG > 1:462371/1‑141 TTGCTAAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGGTTAATTTTAGAACCATCTT < 2:115343/141‑1 TTGCTAAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGGTTAATTTTAGAACCATCTT > 2:649695/1‑141 TTGCTAAAGTGACTTGCCGAGTTGGAATTGGACGATTGAATAGCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCACTGACAATGCACGGTTAACTTTCGAACCATCat > 2:51651/1‑139 TGCTAAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGGTTAATTTTAGAACCATCTTC > 1:419833/1‑141 GCTAAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGGTTAATTTTAGAACCATCTTCT > 2:897913/1‑141 TAAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGGTTAATTTTAGAACCATCTTCTGT > 2:239811/1‑141 AAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGGTTAATTTTAGAACCATCTTCTGTT < 1:338655/141‑1 ACATTATCAATGACAGAAGGTGGATACGAATTAGAAACAATTCAATTCCCATACTTTGATAGTGATGGAGATGGGATATTCAATCGTCCAATTCCAACTCGACAAGTCACTTTAGCAAATGGTGACAAAGTCCGTATTGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2519398‑2519257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctaAAGTGACTTGTCGAGTTGGAATTGGACGATTGAATATCCCATCTCCATCACTATCAAAGTATGGGAATTGAATTGTTTCTAATTCGTATCCACCTTCTGTCATTGATAATGTAGGGTTAATTTTAGAACCATCTTCTGTT > CP000730/2519287‑2519426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |