| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2567817 = | 82 (0.930) | 3 (0.040) | 3/244 | NT | 3.9% | coding (104/1830 nt) | ydaO | APC family amino acid‑polyamine‑organocation transporter |
| ? | CP000730 | 2567861 = | 72 (0.860) | coding (60/1830 nt) | ydaO | APC family amino acid‑polyamine‑organocation transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATAGTGATATCCATCAAAAACTATAAAAAGGAATAGGAGATTATGTTCAATCAATTTAAAAGACTTATTATAGGGCAACCTAAAAAAAACAGAGAACTAAAAGACGAAAAGATATCGAAGTTTAAAGGGTTAGCGATTCTTTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2567963‑2567817‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcgtcTTTTAGTTCTCTGTTTTTTTTAGGTTGCCCTATAATAAGTCTTTTAAATTGATTGAACATAATCTCCTATTCCTTTTTATAGTTTTTGATGGATATCACTATACGCCTATCTTTCCAAAAAGTATAGAGAGTTAATTAAT > CP000730/2567861‑2568000 TATAGTGATATCCATCAAAAACTATAAAAAGGAATAGGAGATTATGTTCAATCAATTTAAAAGACTTATTATAGGGCAACCTAAAAAAAACAGAGAACTAAAAGACGAAAAGATATCGAAGTTTAAAGGGTTAGCGATTCT < 1:560007/141‑1 TGATATCCATCAAAAACTATAAAAAGGAATAGGAGATTATGTTCAATCAATTTAAAAGACTTATTATAGGGCAACCTAAAAAAAACAGAGAACTAAAAGACGAAAAGATATCGAAGTTTAAAGGGTTAGCGATTCTTTCGT > 2:16510/1‑141 GGAATAGGAGATTATGTTCAATCAATTTAAAAGACTTATTATAGGGCAACCTAAAAAAAACAGAGAACTAAAAGACGAAAAGATATCGAAGTTTAAAGGGTTAGCGATTCTTTCGTCTTTTAGTTCTCTGTTTTTTTTAGG > 1:630816/1‑141 CCTAAAAAAAACAGAGAACTAAAAGACGAAAAGATATCGAAGTTTAAAGGGTTAGCGATTCTTTCGTCTTTTAGTTCTCTGTTTTTTTTAGGTTGCCCTATAATAAGTCTTTTAAATTGATTGAACATAATCTCCTATTCC < 2:630816/141‑1 AAAGACGAAAAGATATCGAAGTTTAAAGGGTTAGCGATTCTTTCGTCTTTTAGTTCTCTGTTTTTTTTAGGTTGCCCTATAATAAGTCTTTTAAATTGATTGAACATAATCTCCTATTCCTTTTTATAGTTTTTGATGGAT > 1:400364/1‑141 TCTTTTAGTTATCTG‑TTTTTTTAGGTTGCCCTATAATAAGTCTTTTAAATTGATTGAACATAATCTCCTATTCCTTTTTATAGTTTTTGATGGATATCACTATACGCCTATCTTTAAAAAAAGTATAGAGAGTTAATTAAT < 2:645518/141‑1 TATAGTGATATCCATCAAAAACTATAAAAAGGAATAGGAGATTATGTTCAATCAATTTAAAAGACTTATTATAGGGCAACCTAAAAAAAACAGAGAACTAAAAGACGAAAAGATATCGAAGTTTAAAGGGTTAGCGATTCTTTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2567963‑2567817‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcgtcTTTTAGTTCTCTGTTTTTTTTAGGTTGCCCTATAATAAGTCTTTTAAATTGATTGAACATAATCTCCTATTCCTTTTTATAGTTTTTGATGGATATCACTATACGCCTATCTTTCCAAAAAGTATAGAGAGTTAATTAAT > CP000730/2567861‑2568000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |