| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2780408 | 96 (1.080) | 2 (0.020) | 3/246 | NT | 2.1% | coding (325/1437 nt) | arcD3 | APC family amino acid‑polyamine‑organocation transporter |
| ? | CP000730 | = 2780412 | 94 (1.110) | coding (321/1437 nt) | arcD3 | APC family amino acid‑polyamine‑organocation transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGATAAATGCTGCTGTTTCAACGCCTTTTAAAATCAAGAAATGGACACCCCAGAGTAGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2780264‑2780408‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgcCTATGCAACACTATTGATGTCAGCAGTAGGTAACTTTTTCCCGATTTTTAAAGGAGGCAACACATTACCAAGTGTTATTGTCGCCTCGTTACTACTCTGGGGTGTCCATTTCTTGATTTTAAAAGGCGTTGAAACAGC < CP000730/2780412‑2780275 TGATAAATGCTGCTGTTTCAACGCCTTTTAAAATCAAGAAATGGACACCCCAGAGTAGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTG < 1:28158/141‑1 GATAAATGCTGCTGTTTCAACGCCTTTTAAAATCAAGAAATGGACACCCCAGAGTAGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGT > 1:120938/1‑141 GATAAATGCTGCTGTTTCAACGCCTTTTAAAATCAAGAAATGGACACCCCAGAGTAGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACC‑ACTGCTGACATCAATAGTGTT > 1:816678/1‑141 TAAATGCTGCTGTTTCAACGCCTTTTAAAATCAAGAAATGGACACCCCAGAGTAGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTG > 1:291772/1‑141 TGCTGCTGTTTCAACGCCTTTTAAAATCAAGAAATGGACACCCCAGAGTAGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCCTA < 2:620051/141‑1 GCTGCTGTTTCAACGCCTTTTAAAATCAAGAAATGGACACCCCAGAGTAGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCCTAT < 2:311823/141‑1 AAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACACTATTGATGTCAGCAGTAGGTAACTTTTTCCCGATTTTTAAAGGAGGCAACACATTACCAAGTGTTATTGTCGCCTCGTTACTACT > 1:936656/1‑141 GGAAAAAGTTACCTACTGCTGACATCAATAGTGTAACATAGGCAACAATATTGATGTCAGCAGTAGGTAACTTTTTCCCGATTTTGGAAGGAGGCAACACATTACCAAGTGTTATTGTCGCCTCATTAATAAGCTGGGagg > 1:862104/1‑138 AATAGTGTTGCATAGGCAACACTATTGATGTCAGCAGTAGGTAACTTTTTCCCGATTTTTAAAGGAGGCAACACATTACCAAGTGTTATTGTCGCCTCGTTACTACTCTGGGGTGTCCATTTCTTGATTTTAAAAGGCGTT < 2:936656/141‑1 gcaacaTTGCCTATGCAACACTATTGATGTCAGCAGTAGGTAACTTTTTCCCGATTTTTAAAGGAGGCAACACATTACCAAGTGTTATTGTCGCCTCGTTACTACTCTGGGGTGTCCATTTCTTGATTTTAAAAGGCGTTG > 2:588610/7‑141 GTTGCCTATGCAACACTATTGATGTCAGCAGTAGGTAACTTTTTCCCGATTTTTAAAGGAGGCAACACATTACCAAGTGTTATTGTCTCCTCGTTACTACTCTGGGGTGTCCATTTCTTGATTTTAAAAGGCGTTGAAACA < 1:550335/141‑1 TGCCTATGCAACACTATTGATGTCAGCAGTAGGTAACTTTTTCCCGATTTTTAAAGGAGGCAACACATTACCAAGTGTTATTGTCGCCTCGTTACTACTCTGGGGTGTCCATTTCTTGATTTTAAAAGGCGTTGAAACAGC < 1:18064/141‑1 TGCCTATGCAACACTATTGATGTCAGCAGAAGGTAACTTTTTCCCGATTTTTAAAGGAGTCAACACATTACCAAGTGTTATTGTCGCCTCGTTACTACTCTGGGGTGTCCATTTCTTGATTTTAAAAGGCTTTGAAACAGC < 1:875952/141‑1 TGATAAATGCTGCTGTTTCAACGCCTTTTAAAATCAAGAAATGGACACCCCAGAGTAGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2780264‑2780408‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgcCTATGCAACACTATTGATGTCAGCAGTAGGTAACTTTTTCCCGATTTTTAAAGGAGGCAACACATTACCAAGTGTTATTGTCGCCTCGTTACTACTCTGGGGTGTCCATTTCTTGATTTTAAAAGGCGTTGAAACAGC < CP000730/2780412‑2780275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |