New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 920390	76 (0.860)	4 (0.050)	4/230	NT	5.9%	coding (39/135 nt)	USA300HOU_0880	hypothetical protein
	?	CP000730	= 920428	60 (0.760)					coding (1/135 nt)	USA300HOU_0880	hypothetical protein

CCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGAT  >  CP000730/920288‑920567                                                                                                                                             |                                                                                                                                            ccGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAt                                                                                                                                             <  2:389497/141‑1 (MQ=255)  cgcgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATt                                                                                                                                            <  2:986235‑M2/141‑2 (MQ=255)  cgcgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATt                                                                                                                                            <  1:1682‑M2/141‑2 (MQ=255)   gcgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATtt                                                                                                                                           >  1:618094‑M2/1‑139 (MQ=255)     gACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATtttt                                                                                                                                         <  2:888525‑M2/141‑5 (MQ=255)     gACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCACAATCCACAAAAGCACAAGCACCCCCAGACATTATTTTAGTGCTTGCCATtttt                                                                                                                                         <  2:862294‑M2/141‑5 (MQ=255)       cTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgt                                                                                                                                       <  2:937869‑M2/141‑7 (MQ=255)        tAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtg                                                                                                                                      <  2:123854‑M2/141‑8 (MQ=255)         aGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtgg                                                                                                                                     >  2:288488‑M2/1‑133 (MQ=255)         aGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtgg                                                                                                                                     <  1:669049‑M2/141‑9 (MQ=255)          gCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtgga                                                                                                                                    <  2:325311‑M2/141‑10 (MQ=255)           caacaaCGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggat                                                                                                                                   <  1:802492‑M2/141‑11 (MQ=255)                acGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGt                                                                                                                              >  2:706328/1‑141 (MQ=255)                 cGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGtt                                                                                                                             <  1:499471/141‑1 (MQ=255)                   cATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATCGCGTTTc                                                                                                                           >  2:194822/1‑141 (MQ=255)                    aTCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCt                                                                                                                          >  2:17002/1‑141 (MQ=255)                     tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTa                                                                                                                         >  2:581403/1‑141 (MQ=255)                     tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGAACCCCCAAACATTATTTTAGCGCTTGCCATctttgtggattgaccttctc                                                                                                                         <  2:578717‑M2/141‑21 (MQ=255)                            aaCACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTAcc                                                                                                                  <  1:764648/141‑1 (MQ=255)                               cccATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAACCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt                                                                                                               <  2:716605/140‑1 (MQ=255)                               acCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTAcctcg                                                                                                               >  2:855895/1‑138 (MQ=255)                               acCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt                                                                                                               >  2:245426/1‑141 (MQ=255)                                 catcatGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAttt                                                                                                             >  1:31500/1‑141 (MQ=255)                                     atGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATc                                                                                                         <  1:923691/141‑1 (MQ=255)                                     atGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATc                                                                                                         <  1:808099/141‑1 (MQ=255)                                      tGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCa                                                                                                        >  2:800704/1‑141 (MQ=255)                                      tGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCa                                                                                                        >  2:526236/1‑141 (MQ=255)                                        tCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATaaaa                                                                                                      >  2:904059/1‑141 (MQ=255)                                        tCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCaaa                                                                                                      <  2:704425/141‑1 (MQ=255)                                        tCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCaaa                                                                                                      >  2:190247/1‑141 (MQ=255)                                         ccAATATAATCAATCAAATTAATCAAATCATGTAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTGTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAAc                                                                                                     <  1:782006/141‑1 (MQ=255)                                           aaTATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGa                                                                                                   <  2:339722/141‑1 (MQ=255)                                                 atcaatcaAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACAt                                                                                             >  1:1039689/1‑141 (MQ=255)                                                     atcaaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTGTTGTGGATTGCGTTTCTATTTTACCACTTTAATCAAACGAAAACATCAAg                                                                                         >  1:998525/1‑141 (MQ=255)                                                       caaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCt                                                                                       <  1:767804/141‑1 (MQ=255)                                                         aaTTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGa                                                                                     >  1:89835/1‑141 (MQ=255)                                                                  aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCg                                                                            >  1:297473/1‑141 (MQ=255)                                                                  aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCg                                                                            >  1:368989/1‑141 (MQ=255)                                                                    tcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGaa                                                                          <  2:722445/141‑1 (MQ=255)                                                                        gCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGAt                                                                      >  1:208679/1‑141 (MQ=255)                                                                        gCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGAt                                                                      >  1:33390/1‑141 (MQ=255)                                                                          aaTATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGAttt                                                                    <  1:80462/141‑1 (MQ=255)                                                                           atatAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGAtttt                                                                   >  2:717981/1‑141 (MQ=255)                                                                            tataAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTa                                                                  <  1:120438/141‑1 (MQ=255)                                                                             ataaataaTCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTaa                                                                 <  2:1067899/141‑1 (MQ=255)                                                                               aaataaTCTGCCGCAAGCCACAAATGCACTTGTATCCCCAAACATGATTTTAGTGCGTTCTAGTTTTGTGGATTTCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATc                                                               <  1:762092/141‑1 (MQ=255)                                                                                aataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCa                                                              >  2:1173/1‑141 (MQ=255)                                                                                 ataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATATTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCaa                                                             >  2:125154/1‑141 (MQ=255)                                                                                   aatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGc                                                           >  2:736271/1‑141 (MQ=255)                                                                                     tCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCaa                                                         >  1:302246/1‑141 (MQ=255)                                                                                       gACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCaaaa                                                       <  1:1072799/141‑1 (MQ=255)                                                                                        aCCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCaaaaa                                                      >  1:634603/1‑141 (MQ=255)                                                                                        aCCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATCTCATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCaaaaa                                                      >  1:335805/1‑141 (MQ=255)                                                                                            cAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATc                                                  <  2:887632/141‑1 (MQ=255)                                                                                            cAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATc                                                  >  2:274829/1‑141 (MQ=255)                                                                                                 cacaAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACt                                             >  2:311313/1‑141 (MQ=255)                                                                                                   caAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTaa                                           >  1:371249/1‑141 (MQ=255)                                                                                                   caAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTaa                                           <  1:372427/141‑1 (MQ=255)                                                                                                   caAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTaa                                           >  1:921311/1‑141 (MQ=255)                                                                                                     aaaGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAg                                         >  2:127248/1‑141 (MQ=255)                                                                                                      aagcacaagcacCCCCAAACATTATTTTAGTGCTTGCCATttttgtggattgcggtcgattatttatattgcatgatttgattaatttgattgattttattggacatgatggtgttggcgggatgcgttgttgctagtcgc                                        <  2:642217‑M2/141‑102 (MQ=255)                                                                                                      aagcacaagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGt                                        >  1:912307/1‑141 (MQ=255)                                                                                                      aagcacaagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGt                                        >  2:922894/1‑141 (MQ=255)                                                                                                       agcacaagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGtt                                       <  1:960093/141‑1 (MQ=255)                                                                                                        gcacaagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTc                                      >  1:854455/1‑141 (MQ=255)                                                                                                         cacaagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCg                                     <  1:73229/141‑1 (MQ=255)                                                                                                         cacaagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCg                                     <  2:1054615/141‑1 (MQ=255)                                                                                                          acaagcacCCCCAAACATTATTTTAGTGCTTGCCATttttgtggattgcggtcgattatttatattgcatgatttgattaatttgattgattatattggacatgatggtgttggcgggatgcgttgttgctagtcgcgggc                                    <  1:383829‑M2/141‑106 (MQ=255)                                                                                                          acaagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGc                                    >  1:886989/1‑141 (MQ=255)                                                                                                           caagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCt                                   >  2:478881/1‑141 (MQ=255)                                                                                                           caagcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCt                                   >  2:27281/1‑141 (MQ=255)                                                                                                             agcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGa                                 <  2:982319/141‑1 (MQ=255)                                                                                                              gcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGaa                                >  1:230326/1‑141 (MQ=255)                                                                                                               cacCCCCAAACACGAAATTAGTTCTTGCCATttttgtggattgcggtcgattatttatattgcatgatttgattaatttgattgattatattggacatgatggtgttggcggggtgcgttgttgctagtcgcgggctttgt                               <  2:1017962‑M2/141‑111 (MQ=255)                                                                                                                 cccccAAACATTATTTTAGTGCTTGTGCTtttgtggattgcggtcgattatttatattgcatgatttgattaatttgattgattatattggacatgatggtgttggcgggatgcgttgttgctagtcgagggctttgtcca                             <  2:575599‑M2/141‑113 (MQ=255)                                                                                                                    ccAAACATTATTTTAGTGCTTGCCATTTATGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATAAAAAAAAAAAAAAAACATCAAACTAAAGTTCGCTGAAATGAtt                          <  2:140306/141‑1 (MQ=255)                                                                                                                       aaCATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATg                       <  1:306949/141‑1 (MQ=255)                                                                                                                         cATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGAt                     <  2:31500/141‑1 (MQ=255)                                                                                                                           ttattTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATaa                   >  2:740566/1‑141 (MQ=255)                                                                                                                           ttattTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATaa                   >  1:341435/1‑141 (MQ=255)                                                                                                                                     gCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATAAAGCTGAAGATCGCCGAAAGATTTTACTCCAGAAAAAACATCAAACTAAAGTTCGCTGAAATCATTATGATAAAAGTtaaacg         >  2:472739/1‑137 (MQ=255)                                                                                                                                          ccATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTatg    <  2:724645/141‑1 (MQ=255)                                                                                                                                           cATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTatga   <  1:945125/141‑1 (MQ=255)                                                                                                                                            aTTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTatgat  <  1:13743/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            CCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTGAAATGATTATGATAAAAGTTATATGGTATGAT  >  CP000730/920288‑920567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.