BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	631,329	G→A	5.1%	P201P (CCG→CCA)	USA300HOU_0566 →	possible phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	631,329	0	G	A	5.1%	371.8 / 5.9	118	P201P (CCG→CCA)	USA300HOU_0566	possible phosphatase
Reads supporting (aligned to +/- strand): ref base G (54/57); new base A (2/4); total (56/62)
Fisher's exact test for biased strand distribution p-value = 6.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.16e-01

Only 100 of 121 total aligned reads displayed.

GCTACAATTTAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAAAA  >  CP000730/631190‑631469

gCTACAATTTAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCgg                                                                                                                                             <  1:478368/141‑1 (MQ=255)

    cAATTTAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGAttt                                                                                                                                         <  1:261157/141‑1 (MQ=255)

    cAATTTAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGAttt                                                                                                                                         <  1:261167/141‑1 (MQ=255)

     aaTTTAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGAtttt                                                                                                                                        <  2:336521/141‑1 (MQ=255)

     aaTTTAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGAtttt                                                                                                                                        <  1:934653/141‑1 (MQ=255)

      aTTTAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTtta                                                                                                                                       >  2:145474/1‑141 (MQ=255)

       tttAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTttat                                                                                                                                      <  2:373835/141‑1 (MQ=255)

        ttAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTttatt                                                                                                                                     >  2:91217/1‑141 (MQ=255)

           aaTAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTttattatt                                                                                                                                  <  1:305317/141‑1 (MQ=255)

            aTAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTttattatta                                                                                                                                 <  1:991088/141‑1 (MQ=255)

            aTAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTttattatta                                                                                                                                 <  1:687046/141‑1 (MQ=255)

               gCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATg                                                                                                                              >  2:402973/1‑141 (MQ=255)

                       aCGGTGTATATTGGTGATTCAACGCTTGATGTTTAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCa                                                                                                                      >  1:657985/1‑141 (MQ=255)

                         ggTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGa                                                                                                                    >  2:172193/1‑141 (MQ=255)

                         ggTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGAACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGa                                                                                                                    >  1:333611/1‑141 (MQ=255)

                           tgtATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGaaa                                                                                                                  <  1:697326/141‑1 (MQ=255)

                             tataTTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAAtt                                                                                                                <  1:557105/141‑1 (MQ=255)

                               tatTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTaa                                                                                                              <  2:171511/141‑1 (MQ=255)

                                atTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAAt                                                                                                             <  2:42776/141‑1 (MQ=255)

                                atTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAAt                                                                                                             <  2:2842/141‑1 (MQ=255)

                                atTGGTGATTCAACATTTGATGTTGAGATGGCGCAACATGCTGGTGTACCATCTGCAGCAGTAACATGGGGAGCACATGATGCAAGGTCATTACTTCATTCAAATCCAGATTTTATAATCAATGATCCATCAGAAATTAAt                                                                                                             >  1:323824/1‑141 (MQ=255)

                                          cAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGtattat                                                                                                   >  2:728836/1‑141 (MQ=255)

                                           aaCGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATtata                                                                                                  >  2:425321/1‑141 (MQ=255)

                                            aCGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATaa                                                                                                 >  1:843424/1‑141 (MQ=255)

                                             cGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATaaa                                                                                                >  1:905878/1‑141 (MQ=255)

                                              gTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATaaaa                                                                                               >  2:872186/1‑141 (MQ=255)

                                                ttGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACt                                                                                             >  2:674651/1‑141 (MQ=255)

                                                  gATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTg                                                                                           >  1:520968/1‑141 (MQ=255)

                                                  gATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTg                                                                                           >  1:670069/1‑141 (MQ=255)

                                                  gATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTg                                                                                           >  1:670225/1‑141 (MQ=255)

                                                   aTGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGt                                                                                          >  1:384944/1‑141 (MQ=255)

                                                   aTGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGt                                                                                          <  1:328668/141‑1 (MQ=255)

                                                   aTGTTGAGAGGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGt                                                                                          <  2:298501/141‑1 (MQ=255)

                                                    tGTTGAGATGGCGCAACATGCTGGTGTACCATCTGCAGCAGTAACATGGGGAGCACATGATGCAAGGTCATTACTTCATTCAAATCCAGATTTTATAATCAATGATCCATCAGAAATTAATACAGTATTATAAAATTTGtt                                                                                         <  1:174183/141‑1 (MQ=255)

                                                    tGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGtt                                                                                         >  1:220730/1‑141 (MQ=255)

                                                    tGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGtt                                                                                         <  1:625347/141‑1 (MQ=255)

                                                    tGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGtt                                                                                         >  1:353849/1‑141 (MQ=255)

                                                     gTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAGTGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTa                                                                                        <  2:215115/141‑1 (MQ=255)

                                                         agaTGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAAc                                                                                    >  1:766330/1‑141 (MQ=255)

                                                              gCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAgaga                                                                               >  1:1058805/1‑141 (MQ=255)

                                                              gCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAgaga                                                                               >  1:397712/1‑141 (MQ=255)

                                                               cacaACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGaa                                                                              <  2:611691/141‑1 (MQ=255)

                                                                  aaCGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATAc                                                                           >  2:1069825/1‑141 (MQ=255)

                                                                      tGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATg                                                                       <  2:291902/141‑1 (MQ=255)

                                                                       gCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATgg                                                                      <  2:64944/141‑1 (MQ=255)

                                                                       gCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATgg                                                                      <  2:801199/141‑1 (MQ=255)

                                                                        cTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGt                                                                     >  2:293750/1‑141 (MQ=255)

                                                                        cTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGt                                                                     <  1:179614/141‑1 (MQ=255)

                                                                         tGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGtt                                                                    >  1:76596/1‑141 (MQ=255)

                                                                         tGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGtt                                                                    <  2:342690/141‑1 (MQ=255)

                                                                              tGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAAt                                                               <  2:884267/141‑1 (MQ=255)

                                                                                  aTCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCat                                                           >  2:708788/1‑141 (MQ=255)

                                                                                   tCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCata                                                          >  2:528400/1‑141 (MQ=255)

                                                                                     tGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATAtt                                                        <  1:250412/141‑1 (MQ=255)

                                                                                       cagcagtaacatGGGGAGCACATGATGCAAGGTCATTACTTCATTCAAATCCAGATTTTATAATCAATGATCCATCAGAAATTAATACAGTATTATAAAATTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCa                                                      <  1:772437/130‑1 (MQ=255)

                                                                                       cAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCa                                                      >  1:622386/1‑141 (MQ=255)

                                                                                       cAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCa                                                      <  1:578993/141‑1 (MQ=255)

                                                                                        aGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCAt                                                     >  2:720436/1‑141 (MQ=255)

                                                                                         gCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATa                                                    <  1:180574/141‑1 (MQ=255)

                                                                                         gCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATa                                                    >  2:310303/1‑141 (MQ=255)

                                                                                          cTGTCACTTGGGGTGCACATGATGCAAGGTCATTAGTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATaa                                                   >  1:948154/1‑141 (MQ=255)

                                                                                             taacatGGGGAGCACATGATGCAAGGTCATTACTTCATTCAAATCCAGATTTTATAATCAATGATCCATCAGAAATTAATACAGTATTATAAAATTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAata                                                <  2:250171/136‑1 (MQ=255)

                                                                                              cACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAatat                                               >  2:227621/1‑141 (MQ=255)

                                                                                              cACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCACGGTTAAAATGCATATTCATAAatat                                               >  2:485644/1‑141 (MQ=255)

                                                                                                cTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTa                                             <  2:693359/141‑1 (MQ=255)

                                                                                                      gTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATtat                                       <  2:725043/141‑1 (MQ=255)

                                                                                                         cacaTGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACt                                    <  2:1058805/141‑1 (MQ=255)

                                                                                                           caTGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTa                                  <  2:144048/141‑1 (MQ=255)

                                                                                                             tgatgCAAGGACATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAAAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGa                                <  2:147722/141‑1 (MQ=255)

                                                                                                               atgCAAGGTCATTACTTCCTTCAACTCCGGATTTTATTATAAATGATCCAGCAGACATTACTACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGCTAAAATGCATATTCATAACTATTAGATTCTACTTAGcaa                              >  1:812454/1‑141 (MQ=255)

                                                                                                               atgCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGaaa                              >  1:1008814/1‑141 (MQ=255)

                                                                                                               atgCAAGGTCATTACTTCATTCAAATCCAGATTTTATAATCAATGATCCATCAGAAATTAATACAGTATTATAAAATTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACATAGaaa                              >  1:747771/1‑141 (MQ=255)

                                                                                                                 gCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAat                                                 <  2:554436/120‑1 (MQ=255)

                                                                                                                 gCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAat                                                 >  1:554436/1‑120 (MQ=255)

                                                                                                                 gCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAata                            >  1:1001265/1‑141 (MQ=255)

                                                                                                                 gCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAata                            >  1:977164/1‑141 (MQ=255)

                                                                                                                  cAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAatat                           <  2:543763/141‑1 (MQ=255)

                                                                                                                   aaGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATAtt                          >  1:360900/1‑141 (MQ=255)

                                                                                                                   aaGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATAtt                          <  2:758666/141‑1 (MQ=255)

                                                                                                                       tCATTACTTCATTCAAATCCTGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGc                      <  2:605680/141‑1 (MQ=255)

                                                                                                                       tCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGc                      >  2:585866/1‑141 (MQ=255)

                                                                                                                       tCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGc                      >  1:519764/1‑141 (MQ=255)

                                                                                                                       tCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGc                      <  2:605814/141‑1 (MQ=255)

                                                                                                                          ttACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCttt                   >  2:1025240/1‑141 (MQ=255)

                                                                                                                             cTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGa                >  1:1019335/1‑141 (MQ=255)

                                                                                                                              ttcattcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGGTTTAGAt               <  1:860156/141‑1 (MQ=255)

                                                                                                                              ttcattcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGAt               >  1:276424/1‑141 (MQ=255)

                                                                                                                              ttcattcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGAt               >  2:750881/1‑141 (MQ=255)

                                                                                                                                cattcaAATCCGGTTTTTATTATTTATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTa             <  2:485937/141‑1 (MQ=255)

                                                                                                                                cattcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTa             <  1:72778/141‑1 (MQ=255)

                                                                                                                                  ttcaAATCCGGATTTTATTATTAATGATCCATCAGATATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGGAATATTTCGCTTTAGATTAgg           <  2:605019/141‑1 (MQ=255)

                                                                                                                                  ttcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAgg           <  2:331351/141‑1 (MQ=255)

                                                                                                                                   tcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGa          <  1:728836/141‑1 (MQ=255)

                                                                                                                                   tcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGa          >  1:1015688/1‑141 (MQ=255)

                                                                                                                                      aaTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAAtt       <  2:220730/141‑1 (MQ=255)

                                                                                                                                      aaTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGAGTATACTTAGAAATATTTCGCTTTAGATTAGGAAtt       <  1:29239/141‑1 (MQ=255)

                                                                                                                                       aTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAAttt      >  1:388724/1‑141 (MQ=255)

                                                                                                                                       aTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAAttt      >  2:905093/1‑141 (MQ=255)

                                                                                                                                           ggATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTaaaa  <  2:483147/141‑1 (MQ=255)

                                                                                                                                           ggATTTTATTAGTAATGATCCATCAGAGATGAATACCGTATGATGAAAGTTGTTAAGACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTATAAAGATTTCTCTTTAGATGAGGAATTTaaaa  >  2:542444/1‑141 (MQ=255)

GCTACAATTTAAATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAAAA  >  CP000730/631190‑631469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`