BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,172,863	T→G	6.3%	N191T (AAC→ACC)	USA300HOU_1103 ←	exotoxin

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,172,863	0	T	G	6.3%	281.9 / 10.6	96	N191T (AAC→ACC)	USA300HOU_1103	exotoxin
Reads supporting (aligned to +/- strand): ref base T (44/45); new base G (2/4); total (46/50)
Fisher's exact test for biased strand distribution p-value = 6.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01

GAGGACGTCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCTTTGTATTGCACAAAAAGA  >  CP000730/1172727‑1173003

gagGACGTCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTtata                                                                                                                                          >  1:348417/1‑141 (MQ=255)

  ggACGTCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTtatata                                                                                                                                        >  2:192196/1‑141 (MQ=255)

  ggACGTCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTtatata                                                                                                                                        <  1:873637/141‑1 (MQ=255)

    aCGTCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTATAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATataat                                                                                                                                      >  1:598001/1‑141 (MQ=255)

      gTCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAatat                                                                                                                                    >  1:88781/1‑141 (MQ=255)

      gTCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGACACCGGTGATCTTAAGCTTACCTTTATTAAGATTTTCGTTATATAatat                                                                                                                                    >  2:616943/1‑141 (MQ=255)

       tCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAAtatt                                                                                                                                   <  2:191363/141‑1 (MQ=255)

         aaCAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAAtatttt                                                                                                                                 >  2:119702/1‑141 (MQ=255)

            aGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTTTATTTATTTTCTCCACCGTTGTTCTTAAGCTTACCTTTATTACGATTTTCGTTATATAAtattttatt                                                                                                                              >  1:758421/1‑141 (MQ=255)

              ttattttattAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATattttatttt                                                                                                                            >  1:235516/1‑141 (MQ=255)

              ttattttattAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATattttatttt                                                                                                                            <  1:219499/141‑1 (MQ=255)

                    tattaGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTttatta                                                                                                                      <  2:754449/141‑1 (MQ=255)

                       taGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACg                                                                                                                   >  2:698698/1‑141 (MQ=255)

                       taGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACg                                                                                                                   <  2:906424/141‑1 (MQ=255)

                        aGGATTTTTAACATAAACATTTGCTAAATCTTAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGc                                                                                                                  <  2:199587/141‑1 (MQ=255)

                         ggATTTTTAACATAAACATTTGCTAGATCTGAATGGAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCt                                                                                                                 >  2:865219/1‑141 (MQ=255)

                          gATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTATCGCtt                                                                                                                >  2:567552/1‑141 (MQ=255)

                            tttttAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTtct                                                                                                              <  2:846677/141‑1 (MQ=255)

                             ttttAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTtctc                                                                                                             >  1:829838/1‑141 (MQ=255)

                              tttAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCg                                                                                                            <  1:641452/141‑1 (MQ=255)

                               ttAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGt                                                                                                           >  1:145021/1‑141 (MQ=255)

                                tAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTg                                                                                                          >  1:741560/1‑141 (MQ=255)

                                 aaCATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGc                                                                                                         >  1:4185/1‑141 (MQ=255)

                                   cATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTTGTGctc                                                                                                       >  2:907948/1‑139 (MQ=255)

                                      aaaCATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGa                                                                                                    <  1:161456/141‑1 (MQ=255)

                                          aTTTGCTAGATCTGAATGTAATCTTTTGCTTACATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATc                                                                                                <  2:457188/141‑1 (MQ=255)

                                           tttGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCg                                                                                               <  1:1085097/141‑1 (MQ=255)

                                           tttGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCg                                                                                               >  1:922426/1‑141 (MQ=255)

                                           tttGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCg                                                                                               <  1:688744/141‑1 (MQ=255)

                                             tGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGAt                                                                                             <  2:156556/141‑1 (MQ=255)

                                              gCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGAtt                                                                                            <  2:680873/141‑1 (MQ=255)

                                               cTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCTTGCATGGAAATCGAttt                                                                                           >  2:715295/1‑141 (MQ=255)

                                               cTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGAttt                                                                                           <  2:990707/141‑1 (MQ=255)

                                               cTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGAttt                                                                                           >  2:713450/1‑141 (MQ=255)

                                                 aGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGAtttct                                                                                         <  2:662835/141‑1 (MQ=255)

                                                     cTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCa                                                                                     <  2:335231/141‑1 (MQ=255)

                                                       gAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAAt                                                                                   >  2:235184/1‑141 (MQ=255)

                                                        aaTGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGTACGGAATTAGATTTCTTTCAATg                                                                                  >  2:568555/1‑141 (MQ=255)

                                                           gTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTTTTAATGTTTCTCGTGCACGGAAATCGATTTGTTTCAATGTTa                                                                               >  2:988651/1‑141 (MQ=255)

                                                            tAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTaa                                                                              <  2:676262/141‑1 (MQ=255)

                                                            tAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTaa                                                                              >  2:976569/1‑141 (MQ=255)

                                                             aaTCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAAt                                                                             >  2:759382/1‑141 (MQ=255)

                                                               tCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATAc                                                                           >  2:906942/1‑141 (MQ=255)

                                                                cTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACt                                                                          >  1:138234/1‑141 (MQ=255)

                                                                cTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACt                                                                          <  1:950826/141‑1 (MQ=255)

                                                                 ttttGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTg                                                                         <  1:173557/141‑1 (MQ=255)

                                                                 ttttGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTg                                                                         <  2:852652/141‑1 (MQ=255)

                                                                    tGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGtt                                                                      <  2:960793/141‑1 (MQ=255)

                                                                    tGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGtt                                                                      <  2:580077/141‑1 (MQ=255)

                                                                     gCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGttt                                                                     <  2:163154/141‑1 (MQ=255)

                                                                      cTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTa                                                                    >  1:597914/1‑141 (MQ=255)

                                                                       ttAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTAt                                                                   <  1:193211/141‑1 (MQ=255)

                                                                          aaTCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGc                                                                <  2:1029523/141‑1 (MQ=255)

                                                                           aTCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGcc                                                               >  1:423821/1‑141 (MQ=255)

                                                                               aTAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTgg                                                           <  1:378543/141‑1 (MQ=255)

                                                                               aTAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTgg                                                           <  1:823031/141‑1 (MQ=255)

                                                                                tAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGt                                                          <  2:406398/141‑1 (MQ=255)

                                                                                tAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGt                                                          >  1:828853/1‑141 (MQ=255)

                                                                                tAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGt                                                          <  2:242098/141‑1 (MQ=255)

                                                                                    gtAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTatat                                                      >  1:866701/1‑141 (MQ=255)

                                                                                     tAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCCATGTTAATACTGGTTTATTGCCTTGGTATAtt                                                     <  2:919462/141‑1 (MQ=255)

                                                                                      aGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATAttt                                                    <  1:34389/141‑1 (MQ=255)

                                                                                       gTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATAtttt                                                   <  1:588549/141‑1 (MQ=255)

                                                                                         tattaCCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTAt                                                 >  2:885078/1‑141 (MQ=255)

                                                                                         tattaCCGCCACAGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTAt                                                 >  1:257372/1‑141 (MQ=255)

                                                                                              ccGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCa                                            >  1:890758/1‑141 (MQ=255)

                                                                                              ccGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCa                                            >  1:384790/1‑141 (MQ=255)

                                                                                              ccGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCa                                            <  1:311719/141‑1 (MQ=255)

                                                                                              ccGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGACTTGCTATCTTCTCTGCGCa                                            >  2:856211/1‑141 (MQ=255)

                                                                                                  cACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCaa                                        <  2:519508/141‑1 (MQ=255)

                                                                                                   aCCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCaat                                       >  2:183511/1‑141 (MQ=255)

                                                                                                   aCCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCaat                                       >  1:1062237/1‑141 (MQ=255)

                                                                                                      ggTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCaataat                                    <  2:598064/141‑1 (MQ=255)

                                                                                                        tGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCg                                  >  1:470586/1‑141 (MQ=255)

                                                                                                          aTCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGtt                                <  1:195472/141‑1 (MQ=255)

                                                                                                          aTCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGtt                                <  1:192196/141‑1 (MQ=255)

                                                                                                            cTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTg                              <  1:1065483/141‑1 (MQ=255)

                                                                                                            cTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTg                              >  2:775309/1‑141 (MQ=255)

                                                                                                            cTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTg                              >  1:735418/1‑141 (MQ=255)

                                                                                                               aaGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAg                           <  2:180392/141‑1 (MQ=255)

                                                                                                               aaGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAg                           <  1:782106/141‑1 (MQ=255)

                                                                                                                aGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGt                          >  1:171706/1‑141 (MQ=255)

                                                                                                                aGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGt                          <  2:752779/141‑1 (MQ=255)

                                                                                                                 gCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGtt                         <  2:1085491/141‑1 (MQ=255)

                                                                                                                    tACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTAt                      <  2:828853/141‑1 (MQ=255)

                                                                                                                     aCCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATc                     <  2:21885/141‑1 (MQ=255)

                                                                                                                      ccTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAACTCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCt                    >  2:679737/1‑141 (MQ=255)

                                                                                                                      ccTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCt                    >  1:728098/1‑141 (MQ=255)

                                                                                                                      ccTTTATTACGATTTTCGGTATATAATATTTTATTTTTTATTTACTCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCt                    <  1:556285/141‑1 (MQ=255)

                                                                                                                       cTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCtt                   >  1:170106/1‑141 (MQ=255)

                                                                                                                           attaCGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCTTTGtt               >  2:1036371/1‑140 (MQ=255)

                                                                                                                               cGATTTTCGTTATATAATATTTTATTTTTTTTTTTTTTTTCTCGTGCAAGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGTTATATTTTATGCGCACCATTTATCGTTTGTAGTTTATTTTTGTATTgt           >  2:97579/1‑140 (MQ=255)

                                                                                                                               cGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCTTTGTATTGc           <  1:245145/141‑1 (MQ=255)

                                                                                                                                 aTTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGCGAAAGGAAATTGATTTTTTTCACTGAAAATACGTATTTATTCTCAGACTATATTTTATGCGTACCAATAATCGTTTGTAGTTTATCTTTGTATTGcac         <  1:213629/141‑1 (MQ=255)

                                                                                                                                     tCGATATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAGATCTATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCTTTGTATTGCACaaaa     <  2:135829/141‑1 (MQ=255)

                                                                                                                                       gTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAATTCGTTTTCTTTCAATGTTAATACTGGTTTATTGCCTTTGTATATTTTATGCGCACCAATAATCTTTTGTAGTTTATCTTTGTATTTCACAAAAAg   <  2:480739/141‑1 (MQ=255)

                                                                                                                                        ttATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCTTTGTATTGCACAAAAAGa  <  2:657953/141‑1 (MQ=255)

GAGGACGTCAACAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGCTTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGATTTTCGTTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTTTCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTAGTTTATCTTTGTATTGCACAAAAAGA  >  CP000730/1172727‑1173003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`