BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,354,358	T→C	5.9%	I149M (ATA→ATG)	USA300HOU_1269 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,354,358	0	T	C	5.9%	290.8 / 6.4	102	I149M (ATA→ATG)	USA300HOU_1269	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (55/41); new base C (3/3); total (58/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01

Only 100 of 104 total aligned reads displayed.

TAATCATAAAAATCATAAATAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATACTCGAAAAACGGATGTT  >  CP000730/1354218‑1354497

taatcataaAAATCATAAATAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCtt                                                                                                                                             <  1:797227/141‑1 (MQ=255)

  atcataaaaatcataaaTAACACGTTTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTCAt                                                                                                                                           <  2:662429/141‑1 (MQ=255)

  atcataaaaatcataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTAt                                                                                                                                           <  1:457410/141‑1 (MQ=255)

  atcataaaaatcataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTAt                                                                                                                                           >  2:912613/1‑141 (MQ=255)

    cataaaaatcataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTAttt                                                                                                                                         >  1:152435/1‑141 (MQ=255)

     ataaaaatcataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTc                                                                                                                                        <  1:958970/141‑1 (MQ=255)

          aatcataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTAt                                                                                                                                   >  1:1086609/1‑141 (MQ=255)

           atcataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTaac                                                                                                                                  <  1:791925/141‑3 (MQ=255)

            tcataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCa                                                                                                                                 <  1:811960/141‑1 (MQ=255)

            tcataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCa                                                                                                                                 >  1:817357/1‑141 (MQ=255)

             cataaaTAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTTTTTCTGTCTCaa                                                                                                                                >  2:39427/1‑140 (MQ=255)

              ataaataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAACCTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATg                                                                                                                               <  2:431271/141‑1 (MQ=255)

              ataaataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATg                                                                                                                               <  2:193687/141‑1 (MQ=255)

              ataaataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATg                                                                                                                               <  1:940550/141‑1 (MQ=255)

               taaataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGc                                                                                                                              >  2:251002/1‑141 (MQ=255)

                aaataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCACTATTACTAGTGCTTATTTCTGTATCCTGcg                                                                                                                             >  2:94241/1‑140 (MQ=255)

                aaataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTNTCATGCt                                                                                                                             >  2:816125/1‑141 (MQ=255)

                aaataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCt                                                                                                                             >  2:907950/1‑141 (MQ=255)

                aaataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCt                                                                                                                             >  2:928202/1‑141 (MQ=255)

                  ataaCACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCtca                                                                                                                           <  2:740789/141‑1 (MQ=255)

                     acacGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATTCtcaaca                                                                                                                        >  1:517796/1‑141 (MQ=255)

                       acGATTTGGTTGAACTGTTTGTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAgg                                                                                                                      <  2:759365/141‑1 (MQ=255)

                        cGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGt                                                                                                                     >  2:701586/1‑141 (MQ=255)

                        cGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGt                                                                                                                     >  1:15316/1‑141 (MQ=255)

                           tttGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACa                                                                                                                  <  2:184410/141‑1 (MQ=255)

                           tttGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACa                                                                                                                  >  2:769277/1‑141 (MQ=255)

                              ggTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTTATCAGGTACATCa                                                                                                               >  2:594383/1‑141 (MQ=255)

                              ggTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCCGGTACATCa                                                                                                               >  1:381270/1‑141 (MQ=255)

                              ggTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCa                                                                                                               >  2:1059893/1‑141 (MQ=255)

                                 tGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGCATTTAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAg                                                                                                            <  1:10229/141‑1 (MQ=255)

                                  gAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGt                                                                                                           <  2:581353/141‑1 (MQ=255)

                                  gAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTCATTTCTGTATCATGCTCATCAGGTACATCAAAgg                                                                                                           >  2:760262/1‑140 (MQ=255)

                                        tttCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATaaa                                                                                                     <  2:194115/141‑1 (MQ=255)

                                        tttCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATaaa                                                                                                     <  2:438756/141‑1 (MQ=255)

                                           cTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTCATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATg                                                                                                  <  2:570734/141‑1 (MQ=255)

                                             gTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGtt                                                                                                >  1:603436/1‑141 (MQ=255)

                                             gTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGtt                                                                                                >  1:603447/1‑141 (MQ=255)

                                                 aaGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTTTTTTTTTTTTTTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGtttttt                                                                                            >  2:353059/1‑141 (MQ=255)

                                                  aGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTc                                                                                           >  1:527450/1‑141 (MQ=255)

                                                      tagatagaCTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTAAATGAAAGTGCTTAACTGTTATTTCActc                                                                                       >  2:158259/1‑139 (MQ=255)

                                                       agatagaCTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCACAGTGCTAAAATGCTTTTTCAcccc                                                                                      >  2:193189/1‑141 (MQ=255)

                                                       agatagaCTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCAcccc                                                                                      <  1:379795/141‑1 (MQ=255)

                                                       agatagaCTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCAcccc                                                                                      >  2:251917/1‑141 (MQ=255)

                                                        gatagaCTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCa                                                                                     >  1:928441/1‑141 (MQ=255)

                                                          tagaCTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAGTATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTctctctatt                                                                                   >  2:875140/1‑133 (MQ=255)

                                                           agaCTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCt                                                                                  <  1:470897/141‑1 (MQ=255)

                                                             aCTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTGTTTCAATATTACTAGTGCGTATGTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTGTTCACCCCAGCttt                                                                                >  1:376877/1‑141 (MQ=255)

                                                                ttCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTa                                                                             <  1:235074/141‑1 (MQ=255)

                                                                ttCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTa                                                                             <  2:891431/141‑1 (MQ=255)

                                                                 tCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTAc                                                                            <  2:184078/141‑1 (MQ=255)

                                                                  cTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACa                                                                           <  1:314578/141‑1 (MQ=255)

                                                                  cTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACa                                                                           <  2:381270/141‑1 (MQ=255)

                                                                  cTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGCATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACa                                                                           <  1:294303/141‑1 (MQ=255)

                                                                  cTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTCATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAACTTTTTACa                                                                           >  1:137323/1‑141 (MQ=255)

                                                                    tgatgaATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATc                                                                         >  1:599989/1‑141 (MQ=255)

                                                                     gatgaATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATaa                                                                                                      <  1:843899/111‑1 (MQ=255)

                                                                     gatgaATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATaa                                                                                                      >  2:843899/1‑111 (MQ=255)

                                                                        gaATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACg                                                                     >  1:202907/1‑141 (MQ=255)

                                                                           ttAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGttt                                                                  <  1:392900/141‑1 (MQ=255)

                                                                            tAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTtta                                                                 >  1:150168/1‑141 (MQ=255)

                                                                             aaaCTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACACCAGCTTTTTACATCAACGTttat                                                                >  1:692422/1‑141 (MQ=255)

                                                                                   aTCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAAcc                                                          <  2:848313/141‑1 (MQ=255)

                                                                                     cATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGa                                                        <  1:439954/141‑1 (MQ=255)

                                                                                      aTGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGat                                                       <  1:926411/141‑1 (MQ=255)

                                                                                       tGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGata                                                      >  1:973809/1‑141 (MQ=255)

                                                                                       tGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTAGTAAACCGata                                                      >  2:104368/1‑141 (MQ=255)

                                                                                        gATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGatat                                                     <  1:232372/141‑1 (MQ=255)

                                                                                         atatTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATc                                                    <  1:1024225/141‑1 (MQ=255)

                                                                                          tatTGCTGGCTAATGTAATGACCGACAACTTTTTCAATTTTACTATTGATTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCAAGCTTTTTACATCAAAGTTTATTAAACCGATATCt                                                   >  2:693967/1‑141 (MQ=255)

                                                                                              gCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCCCCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGaaa                                               >  1:284535/1‑141 (MQ=255)

                                                                                               cTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAAc                                              >  1:917665/1‑141 (MQ=255)

                                                                                                    taatgtaatgACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGa                                         <  2:401501/141‑1 (MQ=255)

                                                                                                    taatgtaatgACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGa                                         >  1:965456/1‑141 (MQ=255)

                                                                                                    taatgtaatgACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGa                                         <  1:923074/141‑1 (MQ=255)

                                                                                                     aatgtaatgACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGAt                                        <  1:1020342/141‑1 (MQ=255)

                                                                                                     aatgtaatgACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGAt                                        <  1:95382/141‑1 (MQ=255)

                                                                                                         taatgACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTTATTCCATCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATaaaa                                    >  2:787548/1‑141 (MQ=255)

                                                                                                           atgACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATc                                  >  1:182950/1‑141 (MQ=255)

                                                                                                             gACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCaa                                <  2:471026/141‑1 (MQ=255)

                                                                                                               ccGACAACTTTTTTTTTTTTTTTTTTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTCTATTATACCTATATTTGAAACAATGTAAAAATCAAAt                              >  2:287920/1‑141 (MQ=255)

                                                                                                                cGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATg                             >  2:23763/1‑141 (MQ=255)

                                                                                                                  aCAACTTTTTCAATATTACTATTGCTTATTTCTGTACCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAAt                                   <  1:660218/133‑1 (MQ=255)

                                                                                                                  aCAACTTTTTCAATATTACTATTGCTTATTTCTGTACCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAAt                                   >  2:660218/1‑133 (MQ=255)

                                                                                                                  aCAACTTTTTCAATATTACTATTGCTCATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAACTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGaa                           >  1:175672/1‑141 (MQ=255)

                                                                                                                   cAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAgg                                                                                                                      >  1:691863/1‑49 (MQ=255)

                                                                                                                   cAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAgg                                                                                                                      <  2:691863/49‑1 (MQ=255)

                                                                                                                    aaCTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTTATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACg                         <  2:64195/141‑1 (MQ=255)

                                                                                                                    aaCTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACg                         >  2:610463/1‑141 (MQ=255)

                                                                                                                    aaCTTTTTCAATATGACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGGTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACg                         <  2:927999/141‑1 (MQ=255)

                                                                                                                     aCTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGt                        >  1:1050630/1‑141 (MQ=255)

                                                                                                                         tttttttttttttATTGCTTAATACCGTATCATGCTCATCTGGTACATCAAGGTGATAAAATGTTTTTTCACCCCAGCTTTCTACATCAACGTTTATTATACCGATATCTGAAACTATGATAAACTCAAATGAACGTGCAt                    >  2:683718/13‑141 (MQ=255)

                                                                                                                         tttCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCAt                    <  2:16104/141‑1 (MQ=255)

                                                                                                                           tCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATAc                  <  2:527450/141‑1 (MQ=255)

                                                                                                                           tCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATAc                  <  1:968952/141‑1 (MQ=255)

                                                                                                                               tatTACTATTGCTCATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAACTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATACTCGa              <  2:137323/141‑1 (MQ=255)

                                                                                                                                atTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATACTCGaa             >  1:401006/1‑141 (MQ=255)

                                                                                                                                  tACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCTTTTTTGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATACTCGaaaa           >  2:1055296/1‑141 (MQ=255)

                                                                                                                                   aCTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTTTTTTTTTCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATACTCGaaaaa          >  2:141828/1‑141 (MQ=255)

                                                                                                                                     tATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATACTCGAAAAACg        >  1:931135/1‑141 (MQ=255)

                                                                                                                                           ttATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTTACTTCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATACTCGAAAAACGGATGtt  >  2:392827/1‑141 (MQ=255)

TAATCATAAAAATCATAAATAACACGATTTGGTTGAACTGTTTCTGTAAAAGTATAGATAGACTTTCTTGATGAATTAAACTGATCATGATATTGCTGGCTAATGTAATGACCGACAACTTTTTCAATATTACTATTGCTTATTTCTGTATCATGCTCATCAGGTACATCAAAGTGATAAAATGTTTTTTCACCCCAGCTTTTTACATCAACGTTTATTAAACCGATATCTGAAACAATGATAAAATCAAATGAACGTGCATACTCGAAAAACGGATGTT  >  CP000730/1354218‑1354497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`