Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,997,013	C→G	5.5%	noncoding (61/93 nt)	USA300HOU_t0037 ←	tRNA‑Ser

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,997,013	0	C	G	5.5%	255.5 / 2.9	83	noncoding (61/93 nt)	USA300HOU_t0037	tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (29/49);  new base G (2/3);  total (31/52)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTACGAGACCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCG  >  CP000730/1996874‑1997150                                                                                                                                            |                                                                                                                                          cTACGAGACCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGCGCCCGACGAGCTACCGACCTGCTCCATCCCGCGATAATAAAAACTAATGGCGGAGGAAGAGGCATTCGAACCCCCGCGGcc                                                                                                                                          >  2:94524/1‑141 (MQ=255) cTACGAGACCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGcc                                                                                                                                          >  1:311047/1‑141 (MQ=255)  tACGAGACCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGccc                                                                                                                                         <  2:413923/141‑1 (MQ=255)  tACGAGACCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGccc                                                                                                                                         <  1:79857/141‑1 (MQ=255)  tACGAGACCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCACCGCGGccc                                                                                                                                         <  1:255176/141‑1 (MQ=255)   aCGAGACCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCg                                                                                                                                        >  1:235313/1‑141 (MQ=255)     attaaaaactatgtatTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGtt                                                                                                                                      >  2:652048/14‑141 (MQ=255)      agaCCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTa                                                                                                                                     >  2:552174/1‑141 (MQ=255)          cTATAAAATATTGCGGGAGGCGGATTTGAACCCCCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGc                                                                                                                                 <  2:788675/141‑1 (MQ=255)          cTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGc                                                                                                                                 <  1:247355/141‑1 (MQ=255)          cTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGc                                                                                                                                 <  2:607808/141‑1 (MQ=255)           tataAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGcc                                                                                                                                >  1:743008/1‑141 (MQ=255)           tataAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGcc                                                                                                                                >  2:836417/1‑141 (MQ=255)             taAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTCAAGGCCCt                                                                                                                              >  2:1032454/1‑141 (MQ=255)              aaaaTATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTg                                                                                                                             <  1:326345/141‑1 (MQ=255)              aaaaTATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTg                                                                                                                             >  1:611747/1‑141 (MQ=255)                    ttGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGtt                                                                                                                       <  1:72584/141‑1 (MQ=255)                     tGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGttt                                                                                                                      >  1:60018/1‑141 (MQ=255)                     tGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGACGGctt                                                                                                                      >  1:80145/1‑141 (MQ=255)                      gCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGtttt                                                                                                                     >  1:103548/1‑141 (MQ=255)                      gCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGtttt                                                                                                                     >  2:435653/1‑141 (MQ=255)                        gggAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCa                                                                                                                   <  2:931510/141‑1 (MQ=255)                          gAGGCGGAGTTGAACCACCGGCCTTCGGGTTATGAGCCCGACGAGCCACCGGGCTGCTCCATCCCGCTATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTGAGGCCCTGTCGGTTGTCAAg                                                                                                                 <  2:752298/141‑1 (MQ=37)                            ggCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGAc                                                                                                               >  2:447394/1‑141 (MQ=255)                            ggCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCAGCGATACTCCAAAATAATGGCGGAGGCAGAGGGATTCGAACCCCAGCGGCAAGTTAAGGCCCTGTCGGTTTTCAAGAc                                                                                                               <  1:432395/141‑1 (MQ=25)                                  tttGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATcc                                                                                                         <  1:810456/141‑1 (MQ=255)                                  tttGAACCACCGACCTTCATCGGGTGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATcc                                                                                                         <  1:826289/141‑1 (MQ=37)                                  ttggAACCACCCACCTTCGGGTTAGGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATcc                                                                                                         <  2:650327/138‑1 (MQ=255)                                    tGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCt                                                                                                       <  1:654525/141‑1 (MQ=255)                                     gAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGCCCATGTCGGTTTTCAAGACCGATCCCtt                                                                                                      >  2:1018390/1‑141 (MQ=255)                                         caccGCCCTTCGGTTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCTCGATAATAAAAAATAATGGCGGAGGAAGTGGTGTTCGAACCCCCGCTGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGc                                                                                                  <  2:38021/141‑1 (MQ=37)                                         caccGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATcc                                                                                                         <  1:116370/134‑1 (MQ=255)                                         caccGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATcc                                                                                                         >  2:116370/1‑134 (MQ=255)                                         caccGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGc                                                                                                  <  2:878613/141‑1 (MQ=255)                                         caccGACCCCCGGGTTACGAGCCCGACGGGCTACCGAACTGCCCCATCCCGCGATAGTACAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGGCCGTTAAGCCCCTGTCGGTTTTCAAGACCGATCCCTTCAGc                                                                                                  <  2:60018/141‑1 (MQ=18)                                            cGACCGTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTACAAACAGCAATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCgg                                                                                               <  2:493725/141‑1 (MQ=25)                                              aCCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGAc                                                                                             <  1:250867/141‑1 (MQ=255)                                              aCCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGAGCCGTTAAGCCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGAc                                                                                             >  2:558100/1‑141 (MQ=255)                                               ccTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACt                                                                                            <  1:327367/141‑1 (MQ=255)                                                 ttCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCTATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTg                                                                                          <  1:556841/141‑1 (MQ=255)                                                 ttCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATACAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTg                                                                                          >  2:826282/1‑141 (MQ=255)                                                 ttCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTg                                                                                          <  2:288749/141‑1 (MQ=255)                                                   cGGGGTATGAGCCCGACGAGCTACCGAACTGCGCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCACGACCGATCCCTTCAGCCGGACTTggg                                                                                        <  2:159204/141‑1 (MQ=255)                                                     ggTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTa                                                                                      <  2:178279/141‑1 (MQ=255)                                                        tATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATtc                                                                                   <  2:819647/141‑1 (MQ=255)                                                         aTGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCCGCCGGACTTGGGTATtcc                                                                                  >  1:1045828/1‑141 (MQ=255)                                                         aTGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATtcc                                                                                  <  2:1030110/141‑1 (MQ=255)                                                          tGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGCCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATtcct                                                                                 >  2:933038/1‑141 (MQ=255)                                                                 gacgaGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCattat                                                                          <  1:755577/141‑1 (MQ=255)                                                                    gaGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGAAAtccgacgagactcg                                                                       >  2:741056/1‑130 (MQ=21)                                                                          ccGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGAGCCGTTAAGCCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCAAAATtatatggac                                                                 <  1:558100/141‑6 (MQ=14)                                                                            gAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAAt                                                               <  1:829734/141‑1 (MQ=255)                                                                                 gCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGAGCCGTTAAGCCCCTGTc                                                                                                                           <  2:605526/76‑1 (MQ=17)                                                                                 gCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGAGCCGTTAAGCCCCTGTc                                                                                                                           >  1:605526/1‑76 (MQ=17)                                                                                  cTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATATGTACCTCGcagg                                                         >  2:647338/1‑138 (MQ=255)                                                                                  cTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTat                                                         <  1:737741/141‑1 (MQ=255)                                                                                    ccttCCCGCGATAAGAAAAAGTGTTGGCGGAGCGTGAGGGGTGGGAGGCCGTGGTGCCGGTGAATGGCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTatta                                                       <  1:99129/138‑1 (MQ=12)                                                                                    ccATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTatca                                                       <  2:763342/141‑3 (MQ=255)                                                                                      aTCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTattaat                                                     <  1:771383/141‑1 (MQ=255)                                                                                      aTCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTattaat                                                     >  1:152218/1‑141 (MQ=255)                                                                                           gcgATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATaa                                                >  1:568578/1‑141 (MQ=255)                                                                                           gcgATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATaa                                                >  1:568700/1‑141 (MQ=255)                                                                                           gcgATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATAATTATATGTAACTCGCTattcactaacc                                                >  2:488436/1‑133 (MQ=18)                                                                                            cgATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATaaa                                               <  2:72924/141‑1 (MQ=255)                                                                                            cgATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATaaa                                               >  1:258015/1‑141 (MQ=255)                                                                                              ataataAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAAt                                             <  2:139947/141‑1 (MQ=255)                                                                                              ataataAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAAt                                             <  1:720807/141‑1 (MQ=255)                                                                                              ataataAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAAt                                             <  2:856823/141‑1 (MQ=255)                                                                                              ataataAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAAt                                             <  2:743008/141‑1 (MQ=255)                                                                                              ataataAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAAt                                             <  2:638053/141‑1 (MQ=255)                                                                                              ataataAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAAt                                             <  2:960054/141‑1 (MQ=255)                                                                                                  taaAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTaaa                                         <  1:622072/141‑1 (MQ=255)                                                                                                       aactaaggCGGTGGAAGAGCGATTCGAGCCACGGCGGCCCGGTAAGGCCCTGTCGGGTTGCAAGACCGATCCCATCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAGATTAAATGGCg                                    <  2:40795/135‑1 (MQ=21)                                                                                                        ataatGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCgg                                   <  1:892095/141‑1 (MQ=255)                                                                                                        ataatGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCgg                                   <  1:547303/141‑1 (MQ=255)                                                                                                        ataatGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGCTTTTTTTTACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTGTAGGTAAATCGCTATTAATTATAAAATTAAATGGCgg                                   <  1:782614/141‑1 (MQ=25)                                                                                                            tGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGtctc                               <  1:230136/141‑1 (MQ=255)                                                                                                            ggtcGGAGGAAGAGGGATTCGACCGCCCGCGGCCCGTTAAGGCCCTGGCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGtctc                               <  1:274238/138‑1 (MQ=255)                                                                                                             ggCGGAGGAAGAGGGATTCGAGCCCCCGCGGCCCGGTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCg                              <  1:524359/141‑1 (MQ=255)                                                                                                                 gaggaAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGACgg                          <  1:382673/141‑1 (MQ=255)                                                                                                                            aTTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTAATATAGGTAAATAGACCCTAAGAATAAAATTAAATGGCGGTCTCGACGGGAATCGAAccc               <  1:520611/141‑1 (MQ=21)                                                                                                                             ttCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGTCGGGAATCGAACCcg              >  1:899916/1‑141 (MQ=255)                                                                                                                                 aaCCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGACGGGAATCGAACCCGCGAt          >  1:622405/1‑141 (MQ=255)                                                                                                                                   cccccGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCAATATTATATGTAAATCGCTATTCTCGATCCAGCTACATGACGGTCTCCACGGGAATCGCACCCACGAtca        >  2:962950/1‑140 (MQ=17)                                                                                                                                     cccGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGACGGGAATCGAACCCGCGATCTcc      >  1:425512/1‑141 (MQ=255)                                                                                                                                     cccGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGACGGGAATCGAACCCGCGATCTcc      <  2:611747/141‑1 (MQ=255)                                                                                                                                        gcgGCCCGTTAAGGCCCTATCGTGTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGc   <  1:826282/141‑1 (MQ=255)                                                                                                                                         cgGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCg  >  1:590995/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                          CTACGAGACCTATAAAATATTGCGGGAGGCGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCGAACTGCTCCATCCCGCGATAATAAAAAATAATGGCGGAGGAAGAGGGATTCGAACCCCCGCGGCCCGTTAAGGCCCTGTCGGTTTTCAAGACCGATCCCTTCAGCCGGACTTGGGTATTCCTCCATTATTATAGGTAAATCGCTATTAATTATAAAATTAAATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCG  >  CP000730/1996874‑1997150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑