| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,091,346 | T→C | 5.8% | G85G (GGA→GGG) | USA300HOU_1954 ← | hypothetical bacteriophage protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,091,346 | 0 | T | C | 5.8% | 280.7 / 5.2 | 98 | G85G (GGA→GGG) | USA300HOU_1954 | hypothetical bacteriophage protein |
| Reads supporting (aligned to +/- strand): ref base T (47/45); new base C (3/3); total (50/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCGAAGCACTGACTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTAATGTTAACTT > CP000730/2091207‑2091485 | gcttcggtaCTGACTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATc > 1:237813/9‑141 (MQ=255) ccGAAGCACTGACTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGAccc > 2:410375/1‑141 (MQ=255) cGAAGCACTGACTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCa < 1:58837/141‑1 (MQ=255) cGAAGCACTGACTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCa < 2:580453/141‑1 (MQ=255) aaGCACTGACTAAAAATCATTGACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCaaa < 1:874848/141‑1 (MQ=255) tGACTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAACGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGACCCAAATATTGt < 2:643091/141‑1 (MQ=255) tGACTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGt > 2:685329/1‑141 (MQ=255) aCTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTcc > 1:402938/1‑141 (MQ=255) tAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCa > 1:768706/1‑141 (MQ=255) aaCTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACt < 1:436113/141‑1 (MQ=255) aaCTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACt < 1:309733/141‑1 (MQ=255) aaCTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACt > 2:1077449/1‑141 (MQ=255) aCTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTa > 2:118401/1‑141 (MQ=255) aCTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTa < 1:323015/141‑1 (MQ=255) cTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTaa < 2:146378/141‑1 (MQ=255) tATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAAc > 2:870129/1‑141 (MQ=255) tttacatttacCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCa > 1:111325/1‑141 (MQ=255) tttacatttacCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCa > 2:756817/1‑141 (MQ=255) tttacatttacCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCa < 2:871526/141‑1 (MQ=255) tttacatttacCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCa > 2:67482/1‑141 (MQ=255) tacatttacCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGACCCAAATATTGTCCCAACTAAACCAAg > 2:858411/1‑141 (MQ=255) tttacCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGccac > 2:715691/1‑138 (MQ=255) tttacCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCAcc < 1:295439/141‑1 (MQ=255) tttacCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACACAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCAcc < 2:285674/141‑1 (MQ=255) acCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCcac < 2:235806/141‑1 (MQ=255) ccGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCcaca > 2:596245/1‑141 (MQ=255) ccGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGATTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCcaca > 2:232078/1‑141 (MQ=255) aCCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACAtttt < 2:364024/141‑1 (MQ=255) aCCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACAtttt > 1:795481/1‑141 (MQ=255) aCCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACAtttt < 1:612175/141‑1 (MQ=255) aaaaaCATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCat < 2:885117/141‑1 (MQ=255) aaCATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATc < 2:901844/141‑1 (MQ=255) tGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGt < 1:74456/141‑1 (MQ=255) aGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGtt < 2:683688/141‑1 (MQ=255) aaCTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTACCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCtt > 1:1025094/1‑141 (MQ=255) aCTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTa < 1:957233/141‑1 (MQ=255) aCTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGACCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTa > 1:1008904/1‑141 (MQ=255) tataACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGACCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATc < 2:901956/141‑1 (MQ=255) ataACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCa < 2:1052630/141‑1 (MQ=255) ataACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCa > 2:634321/1‑141 (MQ=255) ataACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCa > 1:677932/1‑141 (MQ=255) ataACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCa > 2:831256/1‑141 (MQ=255) taACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCAt > 1:452611/1‑141 (MQ=255) aaCCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCAtt < 2:894588/141‑1 (MQ=255) ccAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCAtttt > 1:139112/1‑141 (MQ=255) cAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATtttc < 1:435123/141‑1 (MQ=255) aaaGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATtttct < 1:338713/141‑1 (MQ=255) aGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATtttcttt < 1:629787/141‑1 (MQ=255) aTTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTttctttct > 1:139983/1‑141 (MQ=255) aGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTAt > 2:469509/1‑141 (MQ=255) gTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTAtt > 1:538352/1‑141 (MQ=255) tAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGACCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCtt > 2:599661/1‑141 (MQ=255) cATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCa < 1:410727/141‑1 (MQ=255) ttttATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATc < 2:229559/141‑1 (MQ=255) ttATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTa > 1:170260/1‑141 (MQ=255) aTTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTAtt > 1:398333/1‑141 (MQ=255) tCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTtc < 1:1000147/141‑1 (MQ=255) tCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTtc > 2:1032361/1‑141 (MQ=255) tCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTtc > 2:472800/1‑141 (MQ=255) cACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTtct > 1:906438/1‑141 (MQ=255) cACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTtct > 1:399972/1‑141 (MQ=255) aCCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTtctc < 1:184545/141‑1 (MQ=255) ccTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTctct < 2:338720/141‑1 (MQ=255) ccTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTctct > 1:427376/1‑141 (MQ=255) ctctctTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCtctt > 2:107024/1‑141 (MQ=255) ctctctTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCtctt > 2:107070/1‑141 (MQ=255) tctTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCtctttct < 2:801338/141‑1 (MQ=255) atatGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCttttt < 1:763866/141‑1 (MQ=255) atatGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCttttt > 2:339770/1‑141 (MQ=255) atatGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCttttt < 2:88972/141‑1 (MQ=255) tGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGaa > 2:123527/1‑141 (MQ=255) gCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAAt > 1:16487/1‑141 (MQ=255) gCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTCTCTTTTTGAAt > 2:214018/1‑141 (MQ=255) ccATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAg < 2:139112/141‑1 (MQ=255) atctgtgctcGCAATAATGCTATAATTAGCGACCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCa < 1:90276/132‑1 (MQ=255) aTAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCAACTATTTCTCTTTCTTTTTGAATAGCa < 1:850815/141‑1 (MQ=255) gCATACGCAATAATGCTGTTATTAGCCATCCAAATATTGTCCCGACGAAACCAAGCACCCTCATTTTCATATCACGTATGTACTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCATTCTTTTTGAATAGCATCTa < 2:117228/141‑1 (MQ=255) gCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGCATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCCTCTa > 2:1011776/1‑141 (MQ=255) cATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTaa < 2:748153/141‑1 (MQ=255) cGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGtt < 1:658302/141‑1 (MQ=255) ataatGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTAt < 1:1051172/141‑1 (MQ=255) ataatGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTAt < 1:67390/141‑1 (MQ=255) ataatGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATCTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTAt > 1:444030/1‑141 (MQ=255) aatGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTTTTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCt < 2:230178/141‑1 (MQ=255) tGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCACGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTaa < 2:135088/141‑1 (MQ=255) gCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAAt > 2:533136/1‑141 (MQ=255) cTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAAtt > 1:691837/1‑141 (MQ=255) tataATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAAttt < 2:820694/141‑1 (MQ=255) tataATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAAttt < 1:67482/141‑1 (MQ=255) tataATTAGCGATCCAAATATTGTCACAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTCATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAAttt > 1:318274/1‑141 (MQ=255) ataATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTa > 1:630700/1‑141 (MQ=255) ataATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTa > 2:415020/1‑141 (MQ=255) aTTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTTAATATCATCTAAGGTTTTATCTAATTTAATg > 2:837838/1‑141 (MQ=255) aTTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATAACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTAATg > 1:1039982/1‑141 (MQ=255) ttAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTAATGt > 2:434459/1‑141 (MQ=255) tAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTAATGtt < 2:138943/141‑1 (MQ=255) gATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTAATGTTAACt < 1:1077449/141‑1 (MQ=255) gATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTAATGTTAACt < 1:384761/141‑1 (MQ=255) aTCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTAATGTTAACtt > 2:894107/1‑141 (MQ=255) | ACCGAAGCACTGACTAAAACTTATTTACATTTACCGAACCAAAAACATGTCCAGAAACTATAACCAAAGATTAGTTTAAACATTTTATTCACCTCTCTTATATGCCCATAAGCATACGCAATAATGCTATAATTAGCGATCCAAATATTGTCCCAACTAAACCAAGCACCCACATTTTCATATCACGTATGTTCTTATCATTTTCTTTCTTATTCTTTTCATCTATTTCTCTTTCTTTTTGAATAGCATCTAAGGTTTTATCTAATTTAATGTTAACTT > CP000730/2091207‑2091485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |