| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,145,638 | A→G | 5.1% | intergenic (+172/‑189) | USA300HOU_2028 → / → orf5 | possible nitroreductase/amidohydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,145,638 | 0 | A | G | 5.1% | 267.8 / 4.5 | 97 | intergenic (+172/‑189) | USA300HOU_2028/orf5 | possible nitroreductase/amidohydrolase |
| Reads supporting (aligned to +/- strand): ref base A (44/48); new base G (2/3); total (46/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.77e-01 | |||||||||||
AGAATCATTAGTTATTCATTATGTAGTAGTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGTTTTTTGCGTTTCAA > CP000730/2145502‑2145778 | aGAATCATTAGTTATTCATTATGTAGTAGTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGc > 1:900640/1‑141 (MQ=255) gAATCATTAGTTATTCATTATGTAGTAGTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGcc < 1:809103/141‑1 (MQ=255) cATTAGTTATTCATTATGTAGTAGTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCAcc < 2:845476/141‑1 (MQ=255) cATTAGTTATTCATTATGTAGTAGTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCAcc < 1:155470/141‑1 (MQ=255) cATTAGTTATTCATTATGTAGTAGTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCAcc < 2:152255/141‑1 (MQ=255) ccatgttgttggtgtTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCa < 2:314549/128‑1 (MQ=255) gtagtaGTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTg < 1:142508/141‑1 (MQ=255) tagtagTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGt > 1:70513/1‑141 (MQ=255) tagtagTTCTTACACATTAGCCGCTGCCAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGACATACTAATTTCTAAAGAAAAAGTATTTCTTTATGGTAGAGCCCACCCCAACTTGCATTGTCTGt > 2:964696/1‑141 (MQ=255) agtagtTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTa < 2:822134/141‑1 (MQ=255) agtTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGaa < 2:513429/141‑1 (MQ=255) ttCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAAt > 1:105155/1‑141 (MQ=255) cTTACACATTAGCCGATGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAAAAAAAAAAAAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTg < 2:932606/141‑1 (MQ=21) ttACGCAGTAGCCTCTGCTAATGTGCACTCAAGAATAGGAATACATGAGGAAAACTCATGTATAAGAACTACTAATTTCTAAAGAAAAAGTATTTCTGTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTgg < 2:59941/141‑1 (MQ=18) cacaTTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGgtgt > 1:93686/1‑141 (MQ=255) caTTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTggaacac < 2:917374/141‑6 (MQ=255) caTTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTc > 1:689759/1‑141 (MQ=255) aTTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTggaacacc < 2:920568/141‑7 (MQ=255) aTTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTcc < 2:22151/141‑1 (MQ=255) aTTAGCCGATGCTAATGTACACTTAAGAATAGGAATACATAAGTAAAACTCATGTATAAGAAATAAAAAAAAAAAAAAAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTggaacacc < 2:53367/141‑7 (MQ=18) ttAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTggaacacca < 1:951257/141‑8 (MQ=255) tAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCaa < 2:776920/141‑1 (MQ=255) agcagcggctAATGTGTACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCa < 2:939827/101‑1 (MQ=14) agcagcggctAATGTGTACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCa > 1:939827/8‑108 (MQ=17) agcagcggctAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAAt > 1:730711/8‑141 (MQ=255) agcagcGGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAAt > 2:61078/1‑141 (MQ=255) aGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAAt > 1:270447/1‑141 (MQ=255) gctgctAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTtct > 1:1047318/1‑141 (MQ=255) gctgctAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTtcc > 2:479271/1‑140 (MQ=255) tgctAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTctct < 1:619345/141‑1 (MQ=255) gctAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTa < 1:774683/141‑1 (MQ=255) aTGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCAcc > 2:254471/1‑94 (MQ=255) aTGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCAcc < 1:254471/94‑1 (MQ=255) gCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTgggg < 2:99937/141‑1 (MQ=255) cACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGc > 2:312995/1‑141 (MQ=255) cTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGccc > 2:959400/1‑141 (MQ=255) ttAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCCTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGcccc < 2:885004/141‑1 (MQ=255) tAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTgatggggcc < 2:1010561/141‑9 (MQ=255) aGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTGTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATc > 1:855040/1‑141 (MQ=255) gAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCa < 2:329715/141‑1 (MQ=255) ctctgattaTGAGTACAACTCATGTATAAGAAATACTAATTTCTAATGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAacta < 2:1052035/133‑1 (MQ=255) aGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAacta > 2:868077/1‑141 (MQ=255) ggAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAactac > 1:600595/1‑141 (MQ=255) ggAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAactac > 2:15455/1‑141 (MQ=255) aaTACATGAGAAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTg < 1:553012/141‑1 (MQ=255) aTACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGt < 1:323828/141‑1 (MQ=255) catgagttttaCTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCaa > 2:994333/11‑141 (MQ=255) gAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAatat < 2:518080/141‑1 (MQ=255) agttttagtCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAAATAGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATAACTTGCTGTCAGtata > 2:404371/9‑141 (MQ=14) aGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCACTTTGTCTATGTTGGGGCCCCATCCCCTACTGTCAAtcta > 1:590025/1‑141 (MQ=17) aGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAAtata > 1:108266/1‑141 (MQ=255) gTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATaa < 2:620053/141‑1 (MQ=255) aaaaCTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACt < 2:289716/141‑1 (MQ=255) aaaaCTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACt < 1:607733/141‑1 (MQ=255) aaCTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACttt < 2:70513/141‑1 (MQ=255) aCTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCTACAATCTGTGTGTTAATTTATTGGTGATCCAGTGTCTCTCTGTGGGGGCCCCATCAACTACTGTGAATAGAACTTTg > 1:812940/1‑141 (MQ=12) aCTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTg < 2:101111/141‑1 (MQ=255) aCTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTg > 2:635326/1‑141 (MQ=255) cTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGt < 1:533852/141‑1 (MQ=255) aTGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCACCTACTGTCAATATAACTTTGTaga > 2:810501/1‑141 (MQ=255) aTGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTaga > 2:770850/1‑141 (MQ=255) ataAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGCGTTCCAATTTCTCTATGTTGGGGCCCCgccaacttgcattgtctgtagaaattggaacgc < 1:245553‑M2/141‑34 (MQ=255) ataAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGCGTTCCAATTTCTCTATGTTGGGGCCCCgccaacttgcattgtctgtagaaattggaacgc > 2:245553‑M2/1‑108 (MQ=255) aaGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAg < 2:126303/141‑1 (MQ=255) aaGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAg < 1:472692/141‑1 (MQ=255) aaGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAg > 1:780693/1‑141 (MQ=255) aGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAgg > 1:2574/1‑141 (MQ=255) aaaTACTAATTTCTAAAGAACAAGTATTTCTCTATGTGAGCGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGAc < 1:483115/141‑1 (MQ=255) aTACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACtt < 2:453876/141‑1 (MQ=255) aTACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCAAATTTCTCTATGTTGGTGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACtt < 2:1013312/141‑1 (MQ=255) tACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACttt > 2:441570/1‑141 (MQ=255) aCTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGACCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTg > 2:97292/1‑141 (MQ=255) cTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCACCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGa < 1:848639/141‑1 (MQ=255) aaTTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGAtt > 2:187169/1‑141 (MQ=255) aaTTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGAtt < 2:368829/141‑1 (MQ=255) aaTTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGAtt > 1:144867/1‑141 (MQ=255) aTTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGCGCCCCGGACTTTGCttt > 2:654626/1‑141 (MQ=255) tCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTAt < 2:676733/141‑1 (MQ=255) aaGAAAAAGTATTTCTTTATGTTAGAGCCCACCNCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTNTGTCt > 1:384886/1‑141 (MQ=255) aaGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCt > 1:177711/1‑141 (MQ=255) aaaaGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTtgtg < 1:32628/141‑1 (MQ=255) gTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCGCATGAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCg > 1:836344/1‑141 (MQ=255) gTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCg > 1:325741/1‑141 (MQ=255) gTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCg > 1:763317/1‑141 (MQ=255) gTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCg > 1:763332/1‑141 (MQ=255) aTTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGtt > 1:445030/1‑141 (MQ=255) tttCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGttt < 2:22220/141‑1 (MQ=255) tttCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGttt > 2:117742/1‑141 (MQ=255) ttcCTTTATGTTGG‑GCCCCCTCCCACTTGCATTGTCTGTAGAAATTGGCGTTCCAATTTCTCTATGTTGGGGCCCCgccaacttgcattgtctgtagaaattggcgttccaatttctctatgttggggccccgcagtcaac > 2:1028140‑M2/1‑76 (MQ=255) cTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGtttttt > 1:867138/1‑141 (MQ=255) cTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGtttttt < 1:455171/141‑1 (MQ=255) cTTTATGTTAGAGCCCACCCCAACTTGCATTGGCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCAGCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGtttttt < 1:21652/141‑1 (MQ=255) tttATGTTGGGGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGCGTTCCAATTTCTCTATGTTGGGGCCCCgccaacttgcattgtctgtagaaattgggaatccaatttctctatgttggggccccgcagtcaactac < 2:369948‑M2/141‑69 (MQ=255) tttATGTTGGGGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGCGTTCCAATTTCTCTATGTTGGGGCCCCgccaacttgcattgtctgtagaaattgggaatccaatttctctatgttggggccccgcagtcaactac < 1:183755‑M2/141‑69 (MQ=255) tGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGTTTTTTGCGtt < 2:941257/141‑1 (MQ=255) gTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGTTTTTTGCGttt > 1:704575/1‑141 (MQ=255) tAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGTTTTTTGCGTTTCa < 2:2574/141‑1 (MQ=255) agagCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGTTTTTTGCGTTTCaa < 1:105806/141‑1 (MQ=255) | AGAATCATTAGTTATTCATTATGTAGTAGTTCTTACACATTAGCCGCTGCTAATGTGCACTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTAGAGCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCATCAACTACTGTCAATATAACTTTGTAGAGCCTAGGACTTTGATTTTATGTCTTGTGCTCGTTTTTTGCGTTTCAA > CP000730/2145502‑2145778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |