BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,338,218	G→A	5.2%	A47A (GCG→GCA)	USA300HOU_2196 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,338,218	0	G	A	5.2%	383.2 / 3.8	129	A47A (GCG→GCA)	USA300HOU_2196	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (55/66); new base A (2/6); total (57/72)
Fisher's exact test for biased strand distribution p-value = 3.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 133 total aligned reads displayed.

CGGAAAATTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACATCAAATCGCTG  >  CP000730/2338081‑2338356

cGGAAAATTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAAAAAAAAAAAAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCaa                                                                                                                                         <  2:216760/141‑1 (MQ=255)

 ggAAAATTTGGGTGATCGATCGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAATTTGAATCATTATTTAATCATATTATTAATTGCGCACGCACAac                                                                                                                                        <  1:606973/141‑1 (MQ=255)

  gAAAATTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAaca                                                                                                                                       <  1:165338/141‑1 (MQ=255)

  gAAAATTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAaca                                                                                                                                       <  2:562270/141‑1 (MQ=255)

  gAAAATTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAaca                                                                                                                                       <  1:786866/141‑1 (MQ=255)

  gAAAATTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAaca                                                                                                                                       <  2:509183/141‑1 (MQ=255)

  gAAAATTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATCGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAaca                                                                                                                                       <  1:933211/141‑1 (MQ=255)

    aaaTTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAAcaca                                                                                                                                     <  1:529823/141‑1 (MQ=255)

    aaaTTTGGGTGATAGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATATGTTAATGAATTTTGCAAAATTGACTCATTATTTAATCATAATATTCATTGCGCGTGCGCaatgaa                                                                                                                                     <  2:270300/141‑5 (MQ=255)

     aaTTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACaa                                                                                                                                    <  1:310336/141‑1 (MQ=255)

             tGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGgaga                                                                                                                            <  1:869580/141‑1 (MQ=255)

             tGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGgaga                                                                                                                            <  1:681016/141‑1 (MQ=255)

                tCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACAt                                                                                                                         <  2:979942/141‑1 (MQ=255)

                        ttATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGa                                                                                                                 >  2:603701/1‑141 (MQ=255)

                        ttATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGa                                                                                                                 <  2:624172/141‑1 (MQ=255)

                         tataTGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGAc                                                                                                                >  2:64942/1‑141 (MQ=255)

                               cATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAg                                                                                                          <  1:984299/141‑1 (MQ=255)

                                   aaCATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATa                                                                                                      <  1:123553/141‑1 (MQ=255)

                                   aaCATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATa                                                                                                      <  2:789760/141‑1 (MQ=255)

                                   aaCATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATa                                                                                                      >  2:1082027/1‑141 (MQ=255)

                                         cTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGaaa                                                                                                <  2:275776/141‑1 (MQ=255)

                                          tttGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAAt                                                                                               >  2:744649/1‑141 (MQ=255)

                                            tgtgGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATgg                                                                                             <  1:353622/141‑1 (MQ=255)

                                            tgtgGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATgg                                                                                             >  2:248460/1‑141 (MQ=255)

                                             gtgGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGc                                                                                            <  2:256/141‑1 (MQ=255)

                                             gtgGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGc                                                                                            <  1:1019981/141‑1 (MQ=255)

                                             gtgGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTAAATGACATATAGAATAAAGAAATgga                                                                                            >  1:79367/1‑140 (MQ=255)

                                              tgGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAATTTGAATCATTATTTAATCATATTATTAATTGCGCACGCACAACATAAAAAGGAGACATGTCAATGACATATAGAATGAAGAAATGGCa                                                                                           >  2:416997/1‑141 (MQ=255)

                                              tgGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCa                                                                                           <  1:533000/141‑1 (MQ=255)

                                                gATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCaaa                                                                                         >  2:121347/1‑141 (MQ=255)

                                                 aTTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCaaaa                                                                                        <  1:604541/141‑1 (MQ=255)

                                                   tGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAATTTGAATCATTATTTAATCATATTATTAATTGCGCACGCACAACATAAAAAGGAGACATGTCAATGACATATAGAATGAAGAAATGGCAAAAAt                                                                                      <  2:3930/141‑1 (MQ=255)

                                                   tGTTTCACAGTAGGTAATCATTTTTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAAt                                                                                      <  2:318248/141‑1 (MQ=255)

                                                      ttGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTAt                                                                                   >  2:745285/1‑141 (MQ=255)

                                                       tGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATc                                                                                  >  2:47178/1‑141 (MQ=255)

                                                         ataGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATTTTATGATTTATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATcca                                                                                >  2:1033836/3‑141 (MQ=255)

                                                         aCAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATcca                                                                                >  2:619512/1‑141 (MQ=255)

                                                         aCAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATcca                                                                                >  2:671366/1‑141 (MQ=255)

                                                             tAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCAt                                                                            >  1:857480/1‑141 (MQ=255)

                                                              aGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCAtt                                                                           >  2:52584/1‑141 (MQ=255)

                                                              aGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCAtt                                                                           >  1:875982/1‑141 (MQ=255)

                                                                aCAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTAc                                                                         <  1:697084/141‑1 (MQ=255)

                                                                     cATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGttat                                                                    <  1:912346/141‑1 (MQ=255)

                                                                     cATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGttat                                                                    >  1:563103/1‑141 (MQ=255)

                                                                     cATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGttat                                                                    <  1:229673/141‑1 (MQ=255)

                                                                      aTTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGttatt                                                                   >  2:444854/1‑141 (MQ=255)

                                                                       tttGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGttatta                                                                  <  1:358591/141‑1 (MQ=255)

                                                                       tttGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAAAAAAGGAAAAAATTATCCACCATTACGttatta                                                                  <  2:881089/141‑1 (MQ=255)

                                                                        ttGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTaa                                                                 >  2:174110/1‑141 (MQ=255)

                                                                        ttGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTaa                                                                 <  1:588440/141‑1 (MQ=255)

                                                                        ttGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGAACGAAAAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTaa                                                                 <  2:841573/141‑1 (MQ=255)

                                                                         tGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAAt                                                                <  1:361689/141‑1 (MQ=255)

                                                                           tataCGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATgg                                                              >  1:47062/1‑141 (MQ=255)

                                                                           tataCGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATgg                                                              >  2:552237/1‑141 (MQ=255)

                                                                           tataCGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATgg                                                              >  1:186411/1‑141 (MQ=255)

                                                                           tataCGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATgg                                                              >  1:258229/1‑141 (MQ=255)

                                                                           tataCGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATgg                                                              >  2:162201/1‑141 (MQ=255)

                                                                           tataCCTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCAAAAAAAAAAAAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATgg                                                              <  2:1043016/141‑1 (MQ=255)

                                                                            ataCGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGc                                                             <  1:607163/141‑1 (MQ=255)

                                                                            ataCGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGc                                                             >  1:40387/1‑141 (MQ=255)

                                                                             taCGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCt                                                            >  1:325436/1‑141 (MQ=255)

                                                                               cGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGAAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAAAAAAGGAAAAAATTATCCACCATTACGTTATTAATGGCTgg                                                          <  2:427684/141‑1 (MQ=255)

                                                                                 ttAACGAATTTTGAAAAATTGAATCATTATTTAATCAGAATATTCATGGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGgtg                                                        <  1:47896/141‑1 (MQ=255)

                                                                                  tAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGgtgt                                                       <  1:481065/141‑1 (MQ=255)

                                                                                          tttGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACtt                                               >  2:624093/1‑141 (MQ=255)

                                                                                          tttGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACtt                                               >  1:246503/1‑141 (MQ=255)

                                                                                          tttGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACtt                                               >  2:645758/1‑141 (MQ=255)

                                                                                          tttGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACtt                                               <  2:356041/141‑1 (MQ=255)

                                                                                           ttGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGgaga                                                                                                                            >  1:953878/1‑63 (MQ=255)

                                                                                           ttGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGgaga                                                                                                                            <  2:953878/63‑1 (MQ=255)

                                                                                            tGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTg                                             <  1:769882/141‑1 (MQ=255)

                                                                                               aaaaTTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAAt                                          >  2:124365/1‑141 (MQ=255)

                                                                                                  aTTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAAtggt                                       <  1:185602/141‑1 (MQ=255)

                                                                                                  aTTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAAtggt                                       <  1:99662/141‑1 (MQ=255)

                                                                                                    tGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAAtggtgg                                     <  1:944546/141‑1 (MQ=255)

                                                                                                      aaTCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGgtggtg                                   <  1:155545/141‑1 (MQ=255)

                                                                                                      aaTCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGgtggtg                                   <  2:521608/141‑1 (MQ=255)

                                                                                                      aaTCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGgtggtg                                   <  1:1002416/141‑1 (MQ=255)

                                                                                                         cATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAAt                                >  1:585725/1‑141 (MQ=255)

                                                                                                           ttattTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGATATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTc                              <  1:580490/141‑1 (MQ=255)

                                                                                                             attTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGAAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAg                            <  2:295719/141‑1 (MQ=255)

                                                                                                               ttAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGaa                          <  2:446890/141‑1 (MQ=255)

                                                                                                                    cATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGtt                     >  2:123344/1‑141 (MQ=255)

                                                                                                                    cATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGtt                     >  2:929970/1‑141 (MQ=255)

                                                                                                                     ataataTTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTg                    <  1:309189/141‑1 (MQ=255)

                                                                                                                          atTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATaaa               >  1:378751/1‑141 (MQ=255)

                                                                                                                           ttCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAAc              >  2:352965/1‑141 (MQ=255)

                                                                                                                            tCATTGGGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACa             <  1:1076173/141‑1 (MQ=255)

                                                                                                                            tCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAAAAAAAAAAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACa             <  2:493386/141‑1 (MQ=255)

                                                                                                                             cATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATNGTGGTGAATTCANAAGTGTTGATAAACAt            <  1:1082732/141‑1 (MQ=255)

                                                                                                                             cATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACAt            >  1:186810/1‑141 (MQ=255)

                                                                                                                              aTTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACATc           <  2:317307/141‑1 (MQ=255)

                                                                                                                               ttacgcACGCGCAACACCTACAAGACACAAGTCAATGACATATAGAATAAAGAAATGGCAACAATTATCCACCATTACGTTATTACTCGCTGCTGTGATTCCTTTGAATGGTGGTGAATCCCGACGCCTTGATNCACACCa          >  2:816634/4‑141 (MQ=255)

                                                                                                                                tgcgcgtgcgcAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACATCaa         >  1:680242/8‑141 (MQ=255)

                                                                                                                                tgcgcgtgcgcAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACATCaa         >  2:746877/8‑141 (MQ=255)

                                                                                                                                 gcgcACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTAAGAAGTGGTGATAAACATCaaa        >  2:769697/1‑141 (MQ=255)

                                                                                                                                  cgcACGAGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACATCAAAt       <  2:959265/141‑1 (MQ=255)

                                                                                                                                   gcACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACATCAAATc      >  2:321982/1‑141 (MQ=255)

                                                                                                                                   gcACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACATCAAATc      >  2:146391/1‑141 (MQ=255)

                                                                                                                                       gcgcAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGCGAATTCAGAAGTGTTGATAAACATCAAATCGCtg  <  1:444205/141‑1 (MQ=255)

CGGAAAATTTGGGTGATCGATTGTTTATATGCATCAACATTCTTTGTGGATTGTTTGACAGTAGACAGTCATTTGTATACGTTAACGAATTTTGAAAAATTGAATCATTATTTAATCATAATATTCATTGCGCACGCGCAACACAAAAAGGAGACATGTCAATGACATATAGAATAAAGAAATGGCAAAAATTATCCACCATTACGTTATTAATGGCTGGTGTGATTACTTTGAATGGTGGTGAATTCAGAAGTGTTGATAAACATCAAATCGCTG  >  CP000730/2338081‑2338356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`