| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,797,788 | T→C | 5.6% | intergenic (+76/+191) | acmB → / ← USA300HOU_2645 | possible N‑acetylmuramoyl‑L‑alanine amidase/possible isochorismatase hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,797,788 | 0 | T | C | 5.6% | 306.7 / 5.4 | 105 | intergenic (+76/+191) | acmB/USA300HOU_2645 | possible N‑acetylmuramoyl‑L‑alanine amidase/possible isochorismatase hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (51/48); new base C (2/4); total (53/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 105 total aligned reads displayed.
ATTTCTCATAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAA > CP000730/2797650‑2797927 | aTTTCTCATAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGa > 2:594478/1‑141 (MQ=255) tctcATAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACTGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGAttt < 2:685109/141‑1 (MQ=255) tctcATAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGAttt < 2:227442/141‑1 (MQ=255) ctcATAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTc > 2:904272/1‑141 (MQ=255) cATAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCtt > 2:579474/1‑141 (MQ=255) tAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATGAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTAt < 2:124595/141‑1 (MQ=255) tAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTAt < 1:141695/141‑1 (MQ=255) aGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTAtt > 2:957835/1‑141 (MQ=255) aGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTAtt > 1:311401/1‑141 (MQ=255) aGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCCTAtt > 2:560023/1‑141 (MQ=255) gAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTc > 1:1082785/1‑141 (MQ=255) tATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAAtt < 2:910010/141‑1 (MQ=255) tCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTGTAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTaa > 2:294387/1‑141 (MQ=255) cAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTaaa < 2:379573/141‑1 (MQ=255) cAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTaaa > 2:444094/1‑141 (MQ=255) cAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTaaa > 2:35904/1‑141 (MQ=255) aaCGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAAc > 1:930865/1‑141 (MQ=255) aCGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAAcc > 2:495835/1‑141 (MQ=255) aCGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAAcc < 1:148916/141‑1 (MQ=255) aCGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTAATAAGTCTGATTTCTTATTCAATTAAAcc < 1:472895/141‑1 (MQ=255) cGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAAccc > 2:722438/1‑141 (MQ=255) cGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAAccc < 1:673431/141‑1 (MQ=255) agcggcagCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAg > 2:515319/8‑141 (MQ=255) gCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAGCCCGAgg < 2:991487/141‑1 (MQ=255) gCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAgg < 1:518453/141‑1 (MQ=255) tGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTAT‑‑TATTAAACCCGCAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCCGATTTCTTATTCAATTAAACCCGAGGTAtt > 1:835417/1‑141 (MQ=39) gCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAt > 2:1026604/1‑141 (MQ=255) ccGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAtt > 2:477989/1‑141 (MQ=255) cGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTc < 1:286579/141‑1 (MQ=255) cGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTc > 2:461619/1‑141 (MQ=255) gaagaaTTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGtt > 1:1018698/1‑141 (MQ=255) gaagaaTTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGtt > 1:1018120/1‑141 (MQ=255) aagaaTTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTc < 2:930281/141‑1 (MQ=255) aagaaTTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTc < 2:871908/141‑1 (MQ=255) aagaaTTATCATATATTACAGGTAAATAAGTAT‑‑TATTAAACCCGCAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCCGATTTCTTATTCAATTAAACCCGAGGCGTTcgaactga < 1:623925/141‑8 (MQ=255) gaaTTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCGTTcgaactga < 2:971120/141‑8 (MQ=255) gaaTTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCGTTcgaactga < 1:1048199/141‑8 (MQ=255) gaaTTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGa < 2:978982/141‑1 (MQ=255) aaTTATCATATATTACAGGTAAATAAGTATTATATTAGACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGaa > 1:783070/1‑141 (MQ=255) aTTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCGTTcgaactgaat < 1:673422/141‑10 (MQ=255) ttATCATATATTACAGGTAAATAAGTAT‑‑TATTAAACCCGCAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCCGATTTCTTATTCAATTAAACCCGAGGTATTCAGTTCGAACGcc < 2:1060832/141‑1 (MQ=39) tATCATATATTACAGGTAAATAAGTAT‑‑TATTAAACCCGCAAAATTTAAAAGTATAAACAAGGAGTTCGGTCTTAAACATATTTCTGTTCATAAGTCCGAGTTCTTATTCAATTAAACCCGAGGCGTTcgaactgaatacct < 1:718075/141‑14 (MQ=255) aTCATATATCACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGcc > 1:953284/1‑141 (MQ=255) atatTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCggg < 1:1005938/141‑1 (MQ=255) atatTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCggg > 2:459866/1‑141 (MQ=255) atatTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACACGAGGCATTCAGTTCGAACGCCTCggg > 2:1057006/1‑141 (MQ=255) aGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGtttt > 1:148743/1‑141 (MQ=255) aGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGtttt > 1:379595/1‑141 (MQ=255) aaaTAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtatat > 1:745337/1‑141 (MQ=255) aaaTAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtatat > 2:826793/1‑141 (MQ=255) aaTAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATATGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGTGTCGTTTtatata > 1:758663/1‑141 (MQ=255) aGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAata > 1:622519/1‑141 (MQ=255) tattatattaAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatata > 2:385297/1‑141 (MQ=255) atattaAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat < 2:287517/141‑1 (MQ=255) attaAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTAttt > 1:761767/1‑141 (MQ=255) attaAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTAttt > 1:589994/1‑141 (MQ=255) taAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa < 2:632181/141‑1 (MQ=255) taAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa < 2:735825/141‑1 (MQ=255) aaaCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTAt > 2:1086024/1‑141 (MQ=255) aCCCGCAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCCGATTTCTTATTCAATTAAACCCGAGGTATTCAGTTCGAACGCCTCGGGTCATTTTATATAAATATATTATTTTATGt < 1:354592/141‑1 (MQ=255) cccGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt < 2:904993/141‑1 (MQ=255) cccGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt < 2:795384/141‑1 (MQ=255) cGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCa < 1:949658/141‑1 (MQ=255) tAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa > 1:615312/1‑141 (MQ=255) tAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa < 2:912822/141‑1 (MQ=255) aaaTTTATAAGTATAAACAAGGAGTTCGGACGTAAACACATTTCTGATCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg > 2:48755/1‑141 (MQ=255) aaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGt < 2:398927/141‑1 (MQ=255) aaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGt > 2:1014439/1‑141 (MQ=255) aTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGtt > 2:326617/1‑141 (MQ=255) tttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTc > 2:989734/1‑141 (MQ=255) tgtaAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCCTTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCt < 1:294387/139‑1 (MQ=255) taAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCGATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAACCATATCTTTTTATGTTCAAATGTTCCtca > 1:505252/1‑141 (MQ=255) aaGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat < 2:661736/141‑1 (MQ=255) gTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca < 1:940179/141‑1 (MQ=255) gTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca < 2:410807/141‑1 (MQ=255) tataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGt > 2:178876/1‑80 (MQ=255) tataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGt < 1:178876/80‑1 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATcc < 2:842284/141‑1 (MQ=255) cAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGt < 1:538960/141‑1 (MQ=255) aaGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGtt < 1:1016047/141‑1 (MQ=255) gTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAt > 2:84532/1‑141 (MQ=255) ggACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGcc > 1:203038/1‑141 (MQ=255) gACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa > 2:1056568/1‑141 (MQ=255) aCTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATTTTCCTCATCATATACGTTTCAATTGCCAt > 2:570449/1‑141 (MQ=255) aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcaca > 2:421453/1‑141 (MQ=255) aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcaca > 2:551249/1‑141 (MQ=255) aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcaca < 1:336396/141‑1 (MQ=255) cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacac < 1:996020/141‑1 (MQ=255) cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacac < 2:939755/141‑1 (MQ=255) tgtCTGTTCATAAGTCTGATTTCTTATTCAATTAAGCCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATAGTATTTCATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAttt < 2:612386/139‑1 (MQ=255) ttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAtttt < 2:34906/141‑1 (MQ=255) ttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAtttt < 2:35180/141‑1 (MQ=255) cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtat < 1:716330/141‑1 (MQ=255) ttCATAGGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATaaa > 2:847048/1‑141 (MQ=255) ttCATAAGTCTGATTTCTTATCCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtataca > 2:323190/1‑139 (MQ=255) aGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCTGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAg < 1:157380/141‑1 (MQ=255) gTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGc < 2:696669/141‑1 (MQ=255) tCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCa < 1:817769/141‑1 (MQ=255) cTGATTTCTTATTCATTTAAACCCTAGTCACTCAGTCCGAACGCCTCGGACCGTTTTATATAAATATATTATTTTAGGTTCAAATGTTCCGCATCATATTCGTTTCAATTGCCATCTCACACATTTTATCAATATGAGCaa > 2:106741/1‑141 (MQ=255) cTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCaa > 2:586597/1‑141 (MQ=255) | ATTTCTCATAGAACTATCAACGCAGCTGCCGCTGAAGAATTATCATATATTACAGGTAAATAAGTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAA > CP000730/2797650‑2797927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |