| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 418185 = | 46 (1.240) | 3 (0.090) | 3/242 | NT | 6.5% | intergenic (+38/+48) | ychF/USA300HOU_0385 | possible GTP‑binding protein/hypothetical protein |
| ? | CP000730 | 418213 = | 43 (1.240) | intergenic (+66/+20) | ychF/USA300HOU_0385 | possible GTP‑binding protein/hypothetical protein | |||||
CTAATCTTGTTTTAGAGCCTGCTTATACTGGCGAAGGCAAACAATTTTTCAGCACTCAAGATATTATTAACGCGAGTAAAATTATTCCATTCTTTTAATAAATTATACGCATAATTAAAAGAGGC‑GAA‑CAATTGATTCCGCCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/418330‑418185‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctcttTTAATTATGCGTATAATTTATTAAAAGAATGGAATAATTTTACTCGCGTTAATAATATCTTGAGTGCTGAAAAATTGTTTGCCTTCGCCAGTATAAGCAGGCTCTAAAACAAGATTAGCCT > CP000730/418213‑418333 CTAATCTTGTTTTAGAGCCTGCTTATACTGGCGAAGGCAAACAATTTTTCAGCACTCAAGATATTATTAACGCGAGTAAAATTATTCCATTCTTTTAATAAATTATACGCATAATTAAAAGAGGC‑GAA‑CAATTGATTCCGC < 2:197190/141‑1 ATCTTGTTTTAGAGCCTGCTTATACTGGCGAAGGCAAACAATTTTTCAGCACTCAAGATATTATTAACGCGAGTAAAATTATTCCATTCTTTTAATAAATTATACGCATAATTAAAAGAGGC‑GAA‑CAATTGATTCCGCCTC > 2:48112/1‑141 TCCATTCTTTTAATAAATTATACGCATAATTAAAAGAGGCGGAATCAATTG‑TT‑CGCCTCTTTTAATTATGCGTATAATTTATTAAAAGAATGGAATAATTTTACTCGCGTTAATAATATCTTGAGT < 1:389475/126‑1 TCCATTCTTTTAATAAATTATACGCATAATTAAAAGAGGCGGAATCAATTG‑TT‑CGCCTCTTTTAATTATGCGTATAATTTATTAAAAGAATGGAATAATTTTACTCGCGTTAATAATATCTTGAGT > 2:389475/1‑126 AA‑CAATTGATTCCGCCTCTTTTAATTATGCGTATAATTTATTAAAAGAATGGAGTAATTTTACTCTCGTTAATAATATCTTGAGTGCTGAAAAATTGTTTGCCTTCGCCAGTATAAGGAGGCTCTAAAACAAGAGTAGCCT > 2:109560/1‑141 CTAATCTTGTTTTAGAGCCTGCTTATACTGGCGAAGGCAAACAATTTTTCAGCACTCAAGATATTATTAACGCGAGTAAAATTATTCCATTCTTTTAATAAATTATACGCATAATTAAAAGAGGC‑GAA‑CAATTGATTCCGCCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/418330‑418185‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctcttTTAATTATGCGTATAATTTATTAAAAGAATGGAATAATTTTACTCGCGTTAATAATATCTTGAGTGCTGAAAAATTGTTTGCCTTCGCCAGTATAAGCAGGCTCTAAAACAAGATTAGCCT > CP000730/418213‑418333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |