| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2142483 | 42 (1.140) | 3 (0.090) | 3/242 | NT | 7.0% | intergenic (‑36/‑139) | groES/USA300HOU_2026 | chaperone GroES/hypothetical membrane protein |
| ? | CP000730 | = 2142494 | 40 (1.150) | intergenic (‑47/‑128) | groES/USA300HOU_2026 | chaperone GroES/hypothetical membrane protein | |||||
TTAGCACTATCAGTTAAAACAATACCACTTTTAGTTGTTTGTTCTTGTTCTTTTTTCTCAATAATCACACGATTTCCAATTGGTTTTAGCATGATTGTTCCTCCTTAAAAAACCTAAAGTTTAGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2142356‑2142483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagcactCTTTAATGTTAAGTGCTAAACTTTAGG < CP000730/2142494‑2142468 TTAGCACTATCAGTTAAAACAATACCACTTTTAGTTGTTTGTTCTTGTTCTTTTTTCTCAATAATCACACGATTTCCAATTGGTTTTAGCATGATTGTTCCTCCTTAAAAAACCTAAAGTTTAGCACTCTTTAATGTTAAG < 1:114012/141‑1 AGCATGATTGTTCCTCCTTAAAAAACCTAAAGTTTAGCACTCTTTAATGTTAAGTGCTAAACTTTAGG > 1:46263/1‑68 AGCATGATTGTTCCTCCTTAAAAAACCTAAAGTTTAGCACTCTTTAATGTTAAGTGCTAAACTTTAGG < 2:46263/68‑1 TTAGCACTATCAGTTAAAACAATACCACTTTTAGTTGTTTGTTCTTGTTCTTTTTTCTCAATAATCACACGATTTCCAATTGGTTTTAGCATGATTGTTCCTCCTTAAAAAACCTAAAGTTTAGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2142356‑2142483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagcactCTTTAATGTTAAGTGCTAAACTTTAGG < CP000730/2142494‑2142468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |