New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	802131 =	47 (1.270)	4 (0.120)	4/236	NT	9.5%	intergenic (+372/+252)	USA300HOU_0748/dgkA1	hypothetical protein/possible diacylglycerol kinase
	?	CP000730	802180 =	33 (0.980)					intergenic (+421/+203)	USA300HOU_0748/dgkA1	hypothetical protein/possible diacylglycerol kinase

AATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGGTG  >  CP000730/802040‑802319                                                                                                                                             |                                                                                                                                            aaTGTTAAAGGATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAtttt                                                                                                                                             <  2:303867/141‑1 (MQ=255)   tGATAAAGAATCGCTACATAATCACTCAGTAGTCGTTCTTGATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAtttttt                                                                                                                                           <  2:402323/141‑1 (MQ=255)         aGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGaa                                                                                                                                     >  2:54188/1‑141 (MQ=255)         aGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGaa                                                                                                                                     >  2:292502/1‑141 (MQ=255)           aaTCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAtt                                                                                                                                   <  1:345463/141‑1 (MQ=255)            aTCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAttt                                                                                                                                  <  2:208595/141‑1 (MQ=255)              cGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGa                                                                                                                                <  1:423289/141‑1 (MQ=255)                  aCATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaaaa                                                                                                                            >  2:370945/1‑141 (MQ=255)                              aTTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAcc                                                                                                                >  1:364298/1‑141 (MQ=255)                              aTTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAcc                                                                                                                <  1:259007/141‑1 (MQ=255)                                  gTCGTTCTTTATCATTTCCGGCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTa                                                                                                            <  1:397833/141‑1 (MQ=255)                                   tCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTAt                                                                                                           >  2:268807/1‑141 (MQ=255)                                    cGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATg                                                                                                          >  2:214010/1‑141 (MQ=255)                                      ttCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGANTTTGAAAAAGACNCATAAACCACTATGAt                                                                                                        <  1:328330/141‑1 (MQ=255)                                       tCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATTTGTTAATCTATGACAGATTACACGTCTTCCAATTTTTTATAGAATTTGAAAAAGACGCATATACCACTATGAtt                                                                                                       >  2:166853/1‑141 (MQ=255)                                            aTCATTTCCGTTCCTCTCTTAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACTCATAAACCACTATGATTTaaaa                                                                                                  >  2:188323/1‑141 (MQ=255)                                              cATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATa                                                                                                >  1:170763/1‑141 (MQ=255)                                              cATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATCATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATa                                                                                                <  2:424332/141‑1 (MQ=255)                                                 ttCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaa                                                                                             >  2:272300/1‑141 (MQ=255)                                                 ttCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaa                                                                                             <  1:252042/141‑1 (MQ=255)                                                   ccGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaaca                                                                                           >  2:265784/1‑141 (MQ=255)                                                    cGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACat                                                                                          >  1:330612/1‑141 (MQ=255)                                                        ccGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaat                                                                                      >  2:336809/1‑141 (MQ=255)                                                        ccGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaat                                                                                      <  2:109323/141‑1 (MQ=255)                                                        ccGCTCTCAATAAAAGTTAGATTATCTTTTTAGTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTGGAAAAAGACGAATAAACCACTATTCTTTAAAATACAACataaaa                                                                                      >  2:106193/1‑140 (MQ=255)                                                                                tCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAAt                                                              >  2:50361/1‑141 (MQ=255)                                                                                      tattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATg                                                        <  1:57008/141‑1 (MQ=255)                                                                                          ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTg                                                    <  1:268807/141‑1 (MQ=255)                                                                                            AAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGtt                                                  <  1:308645‑M1/141‑1 (MQ=255)                                                                                              ATCGGAGGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGTATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGTCAAAATTATATGTCTGtttt                                                <  2:206910‑M1/141‑1 (MQ=255)                                                                                               tcggatgacgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGttttt                                               >  2:430736‑M2/47‑141 (MQ=255)                                                                                                 ggatgacgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGtttt                                                >  2:57230‑M2/45‑138 (MQ=255)                                                                                                 ggatgacgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGtttt                                                <  1:57230‑M2/94‑1 (MQ=255)                                                                                                   ATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGaaa                                           <  1:377824‑M1/141‑1 (MQ=255)                                                                                                   ATGAATGTGTTAATCTATGGCAGAGTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGaaa                                           >  2:69052‑M1/1‑141 (MQ=255)                                                                                                    TGAATGTGTTAAACTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAAc                                          >  1:413839‑M1/1‑141 (MQ=255)                                                                                                       cgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAgg                                       >  2:452673‑M2/39‑141 (MQ=255)                                                                                                             tAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATa                                 <  1:406680/141‑1 (MQ=255)                                                                                                               aTCTATGGCAGATTACACGTCATCCGATTTTTTTTTTTTTTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGc                               >  2:274338/1‑141 (MQ=255)                                                                                                                tCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCt                              <  2:46127/141‑1 (MQ=255)                                                                                                                   aTGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTaa                           >  1:410900/1‑141 (MQ=255)                                                                                                                      gCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGc                        <  2:31758/141‑1 (MQ=255)                                                                                                                        aGATTACACGTCATCCGATTTTTTATAGACTTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCta                      >  1:333097/1‑141 (MQ=255)                                                                                                                          aTTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCtaat                    <  1:223691/141‑1 (MQ=255)                                                                                                                             acacGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATaaa                 <  2:186134/141‑1 (MQ=255)                                                                                                                                  tcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGa            <  1:333043‑M2/130‑1 (MQ=255)                                                                                                                                       cgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAAtata       <  2:344788‑M2/135‑1 (MQ=255)                                                                                                                                         atttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAg     <  2:197519‑M2/137‑1 (MQ=255)                                                                                                                                          tttTTTATAGAATTTAAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAgg    >  1:151126‑M2/4‑141 (MQ=255)                                                                                                                                            tTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGGTg  <  1:412994‑M2/140‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            AATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGGTG  >  CP000730/802040‑802319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.