New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2082378	46 (1.240)	4 (0.120)	4/236	NT	7.8%	intergenic (+19/+606)	USA300HOU_1940/mapW2	aminotransferase/cell surface protein MapW2
	?	CP000730	= 2082394	52 (1.540)					intergenic (+35/+590)	USA300HOU_1940/mapW2	aminotransferase/cell surface protein MapW2

TGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGAT  >  CP000730/2082254‑2082531                                                                                                                                             |                                                                                                                                          tGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCg                                                                                                                                           >  2:369510/1‑141 (MQ=255)   cACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGga                                                                                                                                         <  2:317876‑M2/141‑3 (MQ=255)     cTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGgatt                                                                                                                                       >  2:145810‑M2/1‑137 (MQ=255)        aaTGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGgattatt                                                                                                                                    >  1:331169‑M2/1‑134 (MQ=255)         aTGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGgattattg                                                                                                                                   <  2:36216‑M2/141‑9 (MQ=255)           gCAACAGACATTCGGCTGGCTTTTAGCTGTGGAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGgattattggt                                                                                                                                 >  2:364559‑M2/1‑131 (MQ=255)                      tCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattttt                                                                                                                      <  1:235833/141‑1 (MQ=255)                         tATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaaa                                                                                                                   >  1:381109/1‑141 (MQ=255)                          aTTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaaaa                                                                                                                  >  2:417491/1‑141 (MQ=255)                              cGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAattat                                                                                                              <  1:45222/141‑1 (MQ=255)                                tttAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTc                                                                                                            >  1:136121/1‑141 (MQ=255)                                  tAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCct                                                                                                          <  2:411203/141‑1 (MQ=255)                                  tAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCct                                                                                                          >  1:256115/1‑141 (MQ=255)                                       gtgtAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCttt                                                                                                     <  1:67294/141‑1 (MQ=255)                                        tgtAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTc                                                                                                    >  1:37037/1‑141 (MQ=255)                                             aaaaaGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGt                                                                                               <  1:15087/141‑1 (MQ=255)                                             aaaaaGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTAGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGt                                                                                               <  1:215337/141‑1 (MQ=255)                                              aaaaGAAGATATCCCACATGTATTTGATTCACTTGCTAAAGCGATTGAAGACTTAAGATAATTAATTTCAACCAATAATCAGATGAGTATGACTCGGATTCTTGGTTTTTTATTTTTAAAATTATTCCTTTTTTCAAAGTa                                                                                              >  2:154227/1‑141 (MQ=255)                                                aagaagATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATc                                                                                            >  1:22497/1‑141 (MQ=255)                                                  gaagaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCAt                                                                                          <  2:214569/141‑1 (MQ=255)                                                  gaagaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATATGATGAGTATGAATTGGATTATTTGTTTTTTATTTTTAAAATTTTTCCTTCTTTTCAAGTATCAt                                                                                          >  2:316604/1‑141 (MQ=255)                                                   aagaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATa                                                                                         <  2:337732/141‑1 (MQ=255)                                                   aagaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATa                                                                                         <  1:114228/141‑1 (MQ=255)                                                   aagaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATa                                                                                         >  2:266824/1‑141 (MQ=255)                                                     gaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAg                                                                                       >  2:346448/1‑141 (MQ=255)                                                      atatCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGa                                                                                      <  1:349707/141‑1 (MQ=255)                                                      atatCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGa                                                                                      <  1:434987/141‑1 (MQ=255)                                                          cccACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatata                                                                                  <  1:394100/141‑1 (MQ=255)                                                                 gTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAtt                                                                           >  1:73128/1‑141 (MQ=255)                                                                   aTTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAttta                                                                         >  1:102836/1‑139 (MQ=255)                                                                        aTTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGa                                                                                      <  2:433558/123‑1 (MQ=255)                                                                        aTTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGa                                                                                      >  1:433558/1‑123 (MQ=255)                                                                         ttCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACt                                                                   >  1:62315/1‑141 (MQ=255)                                                                             aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTc                                                               >  1:29474/1‑141 (MQ=255)                                                                             aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTc                                                               >  2:152740/1‑141 (MQ=255)                                                                                  tAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAaca                                                          >  1:301675/1‑141 (MQ=255)                                                                                     aGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTAAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACta                                                       >  1:115909/1‑141 (MQ=255)                                                                                            gatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTTAATTTTTTTTTTTTTTCAAAGTATCATAAGATATATTTTATTTAGCAACTTGTCAAACACTATACCTaa                                                >  2:310372/1‑141 (MQ=255)                                                                                            gatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTaa                                                >  1:289519/1‑141 (MQ=255)                                                                                              tgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt                                              >  2:363909/1‑141 (MQ=255)                                                                                              tgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt                                              >  1:76517/1‑141 (MQ=255)                                                                                              tgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTACTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt                                              >  1:7884/1‑141 (MQ=255)                                                                                                  ttAAGATAATTAATTTCAACCAATAAACTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATAATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGtt                                          >  1:186241/1‑141 (MQ=255)                                                                                                   tAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGttt                                         <  1:48270/141‑1 (MQ=255)                                                                                                          attaattTCAACCAATAATCTGATGAGTATGACTCGgattattggttgaaattaattatcttaagtcatcaatcgctttagcaattgaatcaaatacatgtgggatatcttctttttctacacagctaaacgcaatacgaa                                  <  2:156855‑M2/141‑106 (MQ=255)                                                                                                           ttaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACAtc                                 >  1:128556/1‑141 (MQ=255)                                                                                                               tttCAACCAATAATCTGATGAGTATGACTCGgattattggttgaaattaattatcttaagtcatcaatcgctttagcaattgaatcaaatacatgtgggatatcttctttttctacacagctaaacgcaatacgaatatct                             <  1:435685‑M2/141‑111 (MQ=255)                                                                                                                ttCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTcc                            <  1:366669/141‑1 (MQ=255)                                                                                                                  cAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTa                          >  2:124677/1‑141 (MQ=255)                                                                                                                  cAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACATGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTa                          <  1:331603/141‑1 (MQ=255)                                                                                                                    actaaaaatCAGATAAGTATGACTCGGATTATTGGAATATTAAAAATAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAAc                        <  2:275380/135‑1 (MQ=255)                                                                                                                    aCCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTTTATTTTTTCCTTCTTTCAAAGTATCATAAGATATATTTTTTTCAGCAACTTCTCAAACACTATATCTAATTAGTTTTATACATCTCTCCTAAc                        >  2:201663/1‑141 (MQ=255)                                                                                                                      cAATAGTCTGATGAGTATGACTCGgattattggttgaaattaattatcttaagtcatcaatcgctttagcaattgaatcaaatacatgtgggatatcttctttttctacacagctaaacgcaatacgaatatctgttgcat                      <  2:382702‑M2/141‑118 (MQ=255)                                                                                                                      cAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACaa                      <  1:12256/141‑1 (MQ=255)                                                                                                                         taatCAGATGAGTATGACTCGGCGTATTGGTTTTTTCTTTTTTAAATTATTCCTTCTTTCAAAGTATCATAATATATATTTTATTCAGCTACTTGTCAAATCCTATACCTAATTAGTTTTATACTTTTCTCCTAACaatag                   <  2:426965/141‑4 (MQ=255)                                                                                                                         taagCTGATGAGTATGACTCGgattattggttaaaattaattatcttaagtcatcaatcgctttagcaattgaatcaaatacatgtgggatatcttctttttctacacagctaaacgcaatacgaatatctgttgcattaa                   <  2:202935‑M2/141‑121 (MQ=255)                                                                                                                           atCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCa                 <  1:437786/141‑1 (MQ=255)                                                                                                                            tCTGATGAGTATGACTCTGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATGCATCTCTCATAACAAAATCaa                <  2:62315/141‑1 (MQ=255)                                                                                                                               gatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCaaaaa             <  2:148856/141‑1 (MQ=255)                                                                                                                               gatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCaaaaa             <  1:266824/141‑1 (MQ=255)                                                                                                                                 tgaGTATGACTCGGATGATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAAt           >  2:61492/1‑141 (MQ=255)                                                                                                                                      aTGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGAc      <  2:417618/141‑1 (MQ=255)                                                                                                                                          cTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGAt  <  1:25363/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                          TGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGAT  >  CP000730/2082254‑2082531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.