New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	329202 =	81 (1.220)	6 (0.100)	6/246	7.1	8.1%	intergenic (+70/+73)	USA300HOU_0295/USA300HOU_0296	hypothetical membrane protein/hypothetical protein
	?	CP000730	329255 =	61 (0.990)					intergenic (+123/+20)	USA300HOU_0295/USA300HOU_0296	hypothetical membrane protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/329349‑329202 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAACTTTT  >  CP000730/329255‑329392                                                                                                                                                                                                                                                                                                 TGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGG                                                                                                                                                    >  2:210049/1‑141       GGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTT                                                                                                                                              <  1:175954/141‑1        GTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATACGTAACACTGCAAAATTGGTCGCTTT                                                                                                                                             >  1:371254/1‑141                                                                              TAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTT                                                                       >  2:137070/1‑141                                                                                    TGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATAGGTCTCTTTATTTTGTATGTCATGATTAATTTAATGGATGTAATTATATGATGAACCTTCTGAAGCAAAGATGGTTTTTGATGAA                                                                 >  2:167020/1‑141                                                                                                      ACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCACTCC                                              >  2:348002/1‑141                                                                                                          GTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTT                                          >  1:627562/1‑141                                                                                                              GCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACG                                                              <  2:146161/117‑1                                                                                                              GCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACG                                                              >  1:146161/1‑117                                                                                                                                                  TTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATAGACGCCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAACTTTT  >  1:450444/1‑141                                                                                                                                                                                                                                                                                                 TGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/329349‑329202 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAACTTTT  >  CP000730/329255‑329392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.