| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 693067 | 98 (1.470) | 6 (0.090) | 4/254 | 8.3 | 6.0% | intergenic (‑94/+81) | USA300HOU_0635/USA300HOU_0636 | possible replication initiation protein/hypothetical protein |
| ? | CP000730 | = 693085 | 96 (1.510) | intergenic (‑112/+63) | USA300HOU_0635/USA300HOU_0636 | possible replication initiation protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACGCTCTACCCCCCTATTAGTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/692922‑693067‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgcAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTATCAAATCGCTTGCGATTTGATAGGAGGCATAAATAAATATGACTTTAAAAAACCAGTGTACCCCCC < CP000730/693085‑692946 TACGCTCTACCCCCCTATTAGTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCA > 1:211591/1‑141 CATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCAAGCACGGAGTGCGTTA > 1:103145/1‑71 CATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCAAGCACGGAGTGCGTTA < 2:103145/71‑1 GACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCTCAAATGCAAGCACGGAGTGCGTTAA > 1:677355/1‑69 GACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCTCAAATGCAAGCACGGAGTGCGTTAA < 2:677615/69‑1 GACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCTCAAATGCAAGCACGGAGTGCGTTAA < 2:677355/69‑1 GACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCTCAAATGCAAGCACGGAGTGCGTTAA > 1:677615/1‑69 AAATGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTATCAAATCGCTTGCGATTTGATAGGAGGCATAAATAAATATGACTTTAAAAAACCAGTGTAC < 1:454222/141‑1 AATGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTATCAAATCGCTTGCGATTTGATAGGAGGCATAAATAAATATGACTTTAAAAAACCAGTGTACC < 1:29457/141‑1 ATGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTATCAAATCGCTTGCGATTTGATAGGAGGCATAAATAAATATGACTTTAAAAAACCAGTGTACCC > 1:558296/1‑141 TGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTATCAAATCGCTTGCGATTTGATAGGAGGCATAAATAAATATGACTTTAAAAAACCAGTGTACCCC > 1:272579/1‑141 CAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCGTGCGACAAATACGCGTTAAAGAAGCGAGAACGGTCATGTATCAAAGCGCTTGGGATTTGATAGGAGGCATAAATAAATATGACTTTAAAAAACCAGTGTACCCCCC > 1:693598/1‑141 TACGCTCTACCCCCCTATTAGTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/692922‑693067‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgcAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTATCAAATCGCTTGCGATTTGATAGGAGGCATAAATAAATATGACTTTAAAAAACCAGTGTACCCCCC < CP000730/693085‑692946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |