| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2405051 | 67 (1.010) | 4 (0.060) | 4/252 | 8.3 | 5.8% | coding (312/915 nt) | USA300HOU_2268 | UT family urea transporter |
| ? | CP000730 | = 2405065 | 67 (1.060) | coding (298/915 nt) | USA300HOU_2268 | UT family urea transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGTTTTGAGGCATTAACTTTAACGATGTATCTACAAATTTAACCTGTCCTGAAAGTAAAATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2404905‑2405051‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaactTTATTAACGTTACCAGTTGCTGCTGCAGTGAGAGAAGTTTTAAGACCATATAAAGTTCCGATGCTGACGATGCCTTTTGTCATTGTGACTTGGTTTACAATTTTACTTTCAGGACAGGTTAAATTTGTAGATAC < CP000730/2405065‑2404932 ATGTTTTGAGGCATTAACTTTAACGATGTATCTACAAATTTAACCTGTCCTGAAAGTAAAATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCA < 2:658847/141‑1 GTTTTGAGGCATTAACTTTAACGATGTATCTACAAATTTAACCTGTCCTGAAAGTAAAATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGC > 1:16832/1‑141 GTTTTGAGGCATTAACTTTAACGATGTATCTACAAATTTAACCTGTCCTGAAAGTAAAATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGC < 1:698649/141‑1 GTTTTGAGGCATTAACTTTAACGATGTATCTACAAATTTAACCTGTCCTGAAAGTAAAATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGC < 1:355250/141‑1 TGAGGCATTAACTTTAACGATGTATCTACAAATTTAACCTGTCCTGAAAGTAAAATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGCAACT > 2:208701/1‑141 TGAGGCATTAACTTTAACGATGTATCTACAAATTTAACCTGTCCTGAAAGTAAAATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGCAACT > 2:156476/1‑141 AATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGCAACTTTATTAACGTTACCAGTTGCTGCTGCAGTGAGAGAA > 1:497046/1‑124 AATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGCAACTTTATTAACGTTACCAGTTGCTGCTGCAGTGAGAGAA < 2:497046/124‑1 GCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGCAACTTTATTAACGTTACCAGTTGCTGCTGCAGTGAGA > 2:607630/1‑92 GCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGCAACTTTATTAACGTTACCAGTTGCTGCTGCAGTGAGA < 1:607630/92‑1 AGCAACTTTATTAACGTTACCAGTTGCTGCTGCAGTGAGAGAAGTTTTAAGACCATATAAAGTTCCGATGCTGACGATGCCTTTTGTCATTGTGACTTGGTTTACAATTTTACTTTCAGGACAGGTTAAATTTGTAGATAC > 1:184167/1‑141 AGCAACTTTATTAACGTTACCAGTTGCTGCTGCAGTGAGAGAAGTTTTAAGACCATATAAAGTTCCGATGCTGACGATGCCTTTTGTCATTGTGACTTGGTTTACAATTTTACTTTCAGGACAGGTTAAATTTGTAGATAC > 1:569017/1‑141 AGCAACTTTATTAACGTTACCAGTTGCTGCTGCAGTGAGAGAAGTTTTAAGACCATATAAAGTTCCGATGCTGACGATGCCTTTTGTCATTGTGACTTGGTTTACAATTTTACTTTCAGGACAGGTTAAATTTGTAGATAC > 2:626920/1‑141 AGCAACTTTATTAACGTTACCAGTTGCTGCTGCAGTGAGAGAAGTTTTAAGACCATATAAAGTTCCGATGCTGACGATGCCTTTTGTCATTGTGACTTGGTTTACAATTTTACTTTCAGGACAGGTTAAATTTGTAGATAC > 1:137040/1‑141 ATGTTTTGAGGCATTAACTTTAACGATGTATCTACAAATTTAACCTGTCCTGAAAGTAAAATTGTAAACCAAGTCACAATGACAAAAGGCATCGTCAGCATCGGAACTTTATATGGTCTTAAAACTTCTCTCACTGCAGCAGCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2404905‑2405051‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaactTTATTAACGTTACCAGTTGCTGCTGCAGTGAGAGAAGTTTTAAGACCATATAAAGTTCCGATGCTGACGATGCCTTTTGTCATTGTGACTTGGTTTACAATTTTACTTTCAGGACAGGTTAAATTTGTAGATAC < CP000730/2405065‑2404932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |