New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	900736 =	24 (0.830)	3 (0.110)	3/248	3.8	10.8%	coding (108/384 nt)	USA300HOU_0859	hypothetical protein
	?	CP000730	900761 =	27 (0.990)					coding (133/384 nt)	USA300HOU_0859	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTTATAGTGTCATA  >  CP000730/900621‑900901                                                                                                                                             |                                                                                                                                             tagTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTaa                                                                                                                                              >  2:238582/1‑141 (MQ=255)         aTGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAagttagtt                                                                                                                                      >  1:35663/1‑141 (MQ=255)              aaTCAAACAAAAATATCAATTATCAAAAGGGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGCCACGTTTCAATCAGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATaa                                                                                                                                 <  2:331380/141‑1 (MQ=255)                                        aaGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAAt                                                                                                       >  1:269934/1‑141 (MQ=255)                                        aaGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAAt                                                                                                       <  1:15322/141‑1 (MQ=255)                                              ttAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGAtt                                                                                                 <  1:301808/141‑1 (MQ=255)                                                      ttaaacgaagtaTTATACGCGGAAGGTAAGTTTCAATCCGATAAGGACTATCATTACGAGGATAAAGCATTAGATGAATATGCTCTAAGGCTAGTTCATAAAGGATTGTTCAATATTCTTGCGGAGTTCGATTTTGAAGAt                                                                                         >  2:297556/9‑141 (MQ=255)                                                      ttAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGAt                                                                                         >  1:325308/1‑141 (MQ=255)                                                        aGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGa                                                                                       >  1:195401/1‑141 (MQ=255)                                                            gtagtaTTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCa                                                                                   <  1:182666/141‑1 (MQ=255)                                                                tattatACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCAtttt                                                                               <  2:228365/141‑1 (MQ=255)                                                                         aGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTtg                                                                      <  1:139057/141‑1 (MQ=255)                                                                                   gTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAAc                                                            >  2:75702/1‑141 (MQ=255)                                                                                     ttCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACaa                                                          >  1:261413/1‑141 (MQ=255)                                                                                                 aGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAGGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTg                                              <  2:269934/141‑1 (MQ=255)                                                                                                   gACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGAt                                            >  2:245439/1‑141 (MQ=255)                                                                                                       aTCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCa                                        <  2:259188/141‑1 (MQ=255)                                                                                                            tATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCAtttt                                                                               <  2:140720/97‑1 (MQ=255)                                                                                                            tATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCAtttt                                                                               >  1:140720/1‑97 (MQ=255)                                                                                                                  gATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAaaca                             <  1:238582/141‑1 (MQ=255)                                                                                                                   aTAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAaacac                            >  1:191769/1‑141 (MQ=255)                                                                                                                      aaGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAaacacaac                         <  1:251050/141‑1 (MQ=255)                                                                                                                         cATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACg                      <  1:286356/141‑1 (MQ=255)                                                                                                                           ttATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAaacacaac                         <  1:344979/136‑1 (MQ=255)                                                                                                                           ttATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAaacacaac                         >  2:344979/1‑136 (MQ=255)                                                                                                                                tGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCg               >  2:184685/1‑141 (MQ=255)                                                                                                                                 gAATATGCTTTACCGTTATTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGt              >  1:169519/1‑141 (MQ=255)                                                                                                                                     atGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTtata          >  2:342782/1‑141 (MQ=255)                                                                                                                                           tAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTTATAGTGTCa    >  1:54381/1‑141 (MQ=255)                                                                                                                                             aaGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAATAAACACAACACGTTTTCCGTTATAgtgaaaaa  <  2:261413/141‑6 (MQ=255)                                                                                                                                             aaGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATAAAACAATATTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTTATAgaaaaaaa  <  2:35663/141‑8 (MQ=255)                                                                                                                                             |                                                                                                                                             TAGTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTTATAGTGTCATA  >  CP000730/900621‑900901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.