New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	463838 =	30 (0.640)	3 (0.070)	3/266	NT	9.3%	intergenic (+52/‑99)	ppiD/ybaV	periplasmic folding chaperone, has an inactive PPIase domain/putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein
	?	NC_000913_3_bme_pgi	463848 =	29 (0.640)					intergenic (+62/‑89)	ppiD/ybaV	periplasmic folding chaperone, has an inactive PPIase domain/putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein

GCACAAATCGTCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCT  >  NC_000913_3_bme_pgi/463703‑463982                                                                                                                                        |                                                                                                                                                 gCACAAATCGTCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCt                                                                                                                                     >  2:573904/1‑149 (MQ=255)  ggccagggacagggtactgagcagtgctttaattccgtgtttcatactgttttctccttgtttgttaacagtggaatcaccttaacggcagtgaaaacagtaaacaaatggcaatgttcagaaatggaaaaggtCGCTTTCGCGGCCtt                                                                                                                                    >  1:453927‑M1/135‑149 (MQ=255)  cacaAATCGTCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCtt                                                                                                                                    <  1:518679/149‑1 (MQ=255)           tCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTc                                                                                                                           >  1:604521/1‑149 (MQ=255)                   gCTCTGATGAGTAACCTGCGTAAAGAGGCGACAATCAAAATTGGCCATACGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACAtt                                                                                                                   <  1:842453/149‑1 (MQ=255)                          tgaGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCAttt                                                                                                            <  1:573904/149‑1 (MQ=255)                                aCCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATACGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCAATTTCTGAACATTGCCATTTGTTTAc                                                                                                      >  1:831730/1‑149 (MQ=255)                                   tGCGTAAAGAGGCGAAAAGCAAAATTGGCGAGGCGCTGGAACAGCAATAATCCTGAAGACGCCTGGCAAAATAATGGGTTGCAGCTGTGACAAGAAAAGGGCGCTTTCCGGTCCTTTTCCATTTCTTACCATTGCCTTTTGTTTACTGt                                                                                                   >  2:334236/1‑149 (MQ=255)                                     cGTAAAGAGACGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGttg                                                                                                 >  2:90243/1‑148 (MQ=255)                                      cgtaaGAGGCGAAAATCCAACGCTTCGATCCCCTTGAAAAGCAATAATCCTTATTCCGCCTTGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGGCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGtttt                                                                                                <  1:240539/146‑1 (MQ=255)                                          agagGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACt                                                                                            >  2:801669/1‑149 (MQ=255)                                           gagGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTg                                                                                           >  1:754497/1‑149 (MQ=255)                                            agGCGAAAATCAAAATTGGCGATTCGCTGGAACAGTAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAACAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGc                                                                                          <  1:153121/149‑1 (MQ=255)                                              gCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTGGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTTACTGCCg                                                                                        >  2:286687/1‑149 (MQ=255)                                               cGAAAATCAAAATTGGCGATGCGCTGGAACAGCCATAATCCTGAAGCCGCCTCGCAACAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGt                                                                                       >  2:739235/1‑149 (MQ=255)                                                  aaaTCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTCCAGATCAATTCCAGTTGTTTACTGTTTTCACTGCCGTTaa                                                                                    <  1:437647/149‑1 (MQ=255)                                                   aaTCAGAATGGGCGGTGCGCTGGACCAGGAATAATCCTGAAGCCGTCTCGTAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTTCATTTGTGAACATTGCTATTTGTTTACTGTTTTCACTGCCGTTAAg                                                                                   <  2:52898/149‑1 (MQ=255)                                                   aaTCAAAAGTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAg                                                                                   <  1:664664/149‑1 (MQ=255)                                                       ctccttgtttgttaacagtggaatcaccttaacggcagtgaaaacagtaaacaaatggcaatgttcagaaatggaaaaggcCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGttt                                                                                                 <  2:822882‑M1/50‑1 (MQ=255)                                                       ctccttgtttgttaacagtggaatcaccttaacggcagtgaaaacagtaaacaaatggcaatgttcagaaatggaaaaggcCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGttt                                                                                                 >  1:822882‑M1/82‑131 (MQ=255)                                                         aaTTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACACGAAAAGGTCGCTTTAGCGGCCTTTTCCATTTCTGAACATTGCCATTTTTTTACTGTTTTCAATGCCGTTAAAGttctt                                                                             >  1:167888/1‑145 (MQ=255)                                                                  tGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAATAATGCGTTGTAGCTGTATCTAGAATTGGTTGCTTTCGCGGCCTTTTCTATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTa                                                                    <  1:145455/149‑1 (MQ=255)                                                                    cgcTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGACAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACCTTGCCATTTGTTTACTGTTTTCACTGCCGTAAAGGTGATTCAACTGTTaac                                                                  >  1:77788/1‑149 (MQ=255)                                                                         gAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTaacaaaca                                                             >  2:499272/1‑149 (MQ=255)                                                                          taCAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAacaaacaa                                                            <  1:159835/148‑1 (MQ=255)                                                                                     tCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGATGATTCCACTGTTAACAAACAAGGAGAAAACAg                                                 >  1:508896/1‑149 (MQ=255)                                                                                        tGAAGCCTCCGCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATCGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTAt                                              <  2:285523/149‑1 (MQ=255)                                                                                        tGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCAGTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTAt                                              <  1:59742/149‑1 (MQ=255)                                                                                            gccgccTCGCAAAAAAATGCGTTGCAGCTTTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGaaa                                          <  1:329987/149‑1 (MQ=255)                                                                                                        aaaaaTGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGTAGAAACAAGTATGAAACACGGAATTaaa                              >  2:302337/1‑149 (MQ=255)                                                                                                           aaTGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGGAATTAAAGCa                           >  2:452749/1‑149 (MQ=255)                                                                                                                          tAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAACCACGGAATTACAGCACTGCTCATTACCCTg            >  2:347566/1‑149 (MQ=255)                                                                                                                                gAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAACCAAGGAGAAAACAGTCTTAAACACGGAATTAAACAACTTCTCATTACTCTGTCCCTg      >  2:814109/1‑149 (MQ=255)                                                                                                                                    aGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTTTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCt  <  2:831730/149‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                 GCACAAATCGTCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCT  >  NC_000913_3_bme_pgi/463703‑463982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.