New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1333674 =	49 (1.050)	3 (0.070)	3/260	NT	6.1%	intergenic (+29/‑181)	topA/cysB	DNA topoisomerase I, omega subunit/N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor
	?	NC_000913_3_bme_pgi	1333698 =	45 (1.010)					intergenic (+53/‑157)	topA/cysB	DNA topoisomerase I, omega subunit/N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor

CCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTG  >  NC_000913_3_bme_pgi/1333551‑1333843                                                                                                                                                    |                                                                                                                                                  ccAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCttttt                                                                                                                                                  <  2:627820/149‑1 (MQ=255) ccAAACAGCAATATATCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAACGGCCCttttt                                                                                                                                                  >  1:765993/1‑149 (MQ=255)   aaaCAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTa                                                                                                                                                >  2:871412/1‑149 (MQ=255)   aaaCAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTa                                                                                                                                                <  2:836104/149‑1 (MQ=255)    aatagtaaTATTTCTCTTTGGAAATAGACGGAATGGCGACTTGTTGGTTAGTATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTAt                                                                                                                                               <  1:745530/143‑1 (MQ=255)            tatGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCATGTTTTTATAAACAAAAGATCGCGAAAGCGGCCCTTTTTTATTGCAtatt                                                                                                                                       >  1:142346/1‑149 (MQ=255)               cctggcgggttactaatacgatttaataataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtttgaagaaaaaataatatgcaataaaAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATattatt                                                                                                                                    >  1:127‑M1/110‑149 (MQ=255)                   ctTCGGAAAAGGACGGAAAGGCGACTTGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAACTCTTTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTAtttttt                                                                                                                                <  1:129474/149‑1 (MQ=255)                    ttCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTttc                                                                                                                               <  1:319290/149‑1 (MQ=255)                      cgcaaaaaTACGGAATGGCTACTGGTTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTttctt                                                                                                                             <  1:836201/146‑1 (MQ=255)                         gaggaagacgagttaataataaaaaaggtgcgaactataaccactatatcatgtatagccttagtgtataggtgtgaagaaaaaataatatgaaataatAAAGGGTCGCGAAAGCGTCCCTTTTTTAGTGCATATTATTTTTTCTTcac                                                                                                                          >  2:755696‑M1/100‑149 (MQ=255)                           aaaGGCAGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTGTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTCTTTTTTCTTCacac                                                                                                                        >  2:829590/1‑149 (MQ=255)                           aaaGACGTAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTCATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCCGCCCTTTTTTATTGCATATTATTTTTTCTTCccac                                                                                                                        >  2:305858/1‑149 (MQ=255)                                 ggAGAGGCGATTGGCTGGCTGGCATTGTAGGGTGTGGGCGAGTGGGGTGAAGGAAAAAAATAACGTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACCTCTATac                                                                                                                  >  2:530244/1‑149 (MQ=255)                                 ggAAAGGCGACTGGCTGGTCAGAAATTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGGCGCGAAAGCGGCCCTTTTTTATTGCCTATTATTTTTTTTTCTCCCCTATac                                                                                                                  >  2:658097/1‑149 (MQ=255)                                       gCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAg                                                                                                            >  1:492163/1‑149 (MQ=255)                                       gCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAg                                                                                                            >  1:326342/1‑149 (MQ=255)                                            tggctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCtat                                                                                                       <  1:642304/149‑1 (MQ=255)                                             ggctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTttctt                                                                                                                             >  1:327078/1‑126 (MQ=255)                                             ggctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTttctt                                                                                                                             <  2:327078/126‑1 (MQ=255)                                                  gTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGATTTTATAAACAAAGGGTCGCGAAAACGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTAAAAATGa                                                                                                 >  1:526343/1‑149 (MQ=255)                                                     aGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTGTTCACACCTATACACTAAGGCTATAAATGagat                                                                                              >  2:67060/1‑149 (MQ=255)                                                         ttttATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTg                                                                                          >  1:828425/1‑149 (MQ=255)                                                             aTGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTta                                                                                      <  2:828425/149‑1 (MQ=255)                                                                    tGGCAAATGGTTTAAAGGAAAAAAATATCCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTATGGCTATAAATGATATAGTGGTTATAGTTAg                                                                               <  2:162895/149‑1 (MQ=255)                                                                      gCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTAAAAAATAAGGAAATAAATGATATAGTGGTTATAGTTAGCa                                                                             >  1:20179/1‑149 (MQ=255)                                                                       cAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGACGAGGAAACGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATATTGGTGATAGTTAGCAc                                                                            >  1:524996/1‑149 (MQ=255)                                                                            gggTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATATTTCGCACCtttt                                                                       >  2:554373/1‑149 (MQ=255)                                                                             ggTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATAAAGTTGTTATAATTAGCACCttttt                                                                      >  1:504969/1‑149 (MQ=255)                                                                              agtGAAGAAAAAAAATAACCTTTAATTCTGTCAGGTTTTTAGAAAAAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACTTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCtttttt                                                                     <  2:10888/147‑1 (MQ=255)                                                                               ttataGGAAAAAAAACACATGTAATTCTGTCGGGTTTTTATAAACAAAGGGTCGCTAAAGCGGCCCTTTTTTATTGCATTTCATTTTTTCTTCACACCTATACACCAAGGCTATACATGATATAGTGGTTACAGTTAGCACCCTTTtta                                                                    <  2:738420/145‑1 (MQ=255)                                                                                  aaGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTttatta                                                                 >  2:637307/1‑149 (MQ=255)                                                                                     gAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCAGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTttattatta                                                              >  2:146419/1‑149 (MQ=255)                                                                                            aTAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGtt                                                       <  2:765993/149‑2 (MQ=255)                                                                                            aTAACCTTTAATTCTGGCAGGTTTTTATAAACAAAGGGTTTCGAAAGCGGCCCTTTTGTATTGCATATGATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGCGGTTATAGTTAGCACCTTTTTTATTTTTAAATCGTa                                                       <  2:55801/149‑1 (MQ=255)                                                                                            aTAACCTTGAAGTCTGTTAGGGTTGTATAAACAAAGGGTGGCGAAAGCGGCCCTTTTTTATTGCATATTGTTTTTTCTTCACACCTATACACTAATGCTATAAATGATATAGTGGTTATAGTTAGCATCTTTTTTATTATTAAATCGTa                                                       <  2:722778/149‑1 (MQ=255)                                                                                             tAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAAACTATAAATAATATAGTGAATATAGTTAGCACCTTTTATATTATTAAATCGTAt                                                      >  1:196864/1‑149 (MQ=255)                                                                                               aCCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTa                                                    <  2:326342/149‑1 (MQ=255)                                                                                                  tttAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTTTTAAATCGTGTTAGTc                                                 >  2:220569/1‑149 (MQ=255)                                                                                                  gtgaagaaaaaataatatgcactaaaaaagggacgctttcgcgaccctttATTATTTCATATTATTTTTTCTTCACACCTATACACTAAGGCTATACATGATATAGTGGTTATAGTTCGCACCTTTTTTATTATTAACTcgtcttcctc                                                 >  2:755696‑M2/51‑145 (MQ=255)                                                                                                   ttAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTCAGGCTATATATGATATAGTGGTTATAGTTACAACACTCTTTATATTTTAATCGTATTAGttc                                                >  2:819468/1‑147 (MQ=255)                                                                                                   ttAATTCTGTCACGTTTTTATAATTAAAGGGTCGCGAAAGCGGCTCTTTTTTATTGTTTATTATTTTTTCTTCACACCTATACACTAAGGCTATAAGTGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCa                                                <  1:398209/149‑1 (MQ=255)                                                                                                     aaTTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCAcc                                              >  1:45552/1‑149 (MQ=255)                                                                                                      tttttGTCTGGTTTTTATAATTTAAGGGTCGTGAAAGCGGCCCGTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCAccc                                             <  1:652207/145‑1 (MQ=255)                                                                                                          tGTCAGGTTTTTATAAACAAAGGGTCGAGTAAACTTCCTTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCa                                         >  2:644198/1‑149 (MQ=255)                                                                                                            aataatatgcaataaaaaagggccgctttcgcgaccctttTTTATTGCATATTATTTTTTCTTCAAACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTAACCCGCCAgg                                       >  1:127‑M2/41‑149 (MQ=255)                                                                                                             tgggTTTTTATGAAGAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTGAGCAGCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGgt                                      <  2:599799/147‑1 (MQ=255)                                                                                                             cAGGTTTTTATACACAAAGGGTCGCTAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGgt                                      <  2:762740/149‑1 (MQ=255)                                                                                                                 tttttATAAACAAAGGGTCGCTAAAGCGGCCCTTTTTTATTTCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGa                                  <  1:834404/149‑1 (MQ=255)                                                                                                                         aaCAAAGGGTTGCGAAAGCGGCTCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGTTATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGaaaaaa                          <  2:7252/149‑1 (MQ=255)                                                                                                                            aaagggacgccttcgcgaacctttTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGa                       <  1:755696‑M2/125‑1 (MQ=255)                                                                                                                                  tCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTTACTCCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTATTCACCCGCCTGGTGTCACGAAAAAACCATGTTCt                 >  2:691066/1‑149 (MQ=255)                                                                                                                                    gcgAATGCGGTCTTTTTTTATTTCATATTATTGTGTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGa               <  2:247661/149‑1 (MQ=255)                                                                                                                                    gcgAAAGCGTGCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGa               <  2:549078/149‑1 (MQ=255)                                                                                                                                     cgAAAGCGGCCCTGTTTGATTGCATATGATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTGTTTATTATTAAATCGTATTAGTTCCCCGCCAGGTGTGATGAAAAAACGATGTTCTGAt              <  2:731421/149‑1 (MQ=255)                                                                                                                                          gCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGt         <  1:146419/149‑1 (MQ=255)                                                                                                                                                 tttTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGTTATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATAGCGTCTAAGTg  >  1:584537‑M2/4‑149 (MQ=255)                                                                                                                                                 tttTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGATAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTg  >  1:3719‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTG  >  NC_000913_3_bme_pgi/1333551‑1333843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.