| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 2549484 = | NA (NA) | 3 (0.070) | 3/258 | NT | NA | noncoding (19/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_bme_pgi | 3563589 = | NA (NA) | noncoding (8/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATT > NC_000913_3_bme_pgi/3563452‑3563733 | tgcacaaACCCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:480192/146‑1 (MQ=255) aacaaTCCCGTGTGAGTCAGTGGGTGGTGGAGTAGATGCAGTAAAGGTTTTCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATc < 1:388855/149‑1 (MQ=38) acaaTCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCa < 2:208628/149‑1 (MQ=255) agtaacattactgactggcctcagattgttgaccaagtgcgcgttgtacacgccggatgcggcgtgaacgccttatccggcctacgaaatcgtgctaattcaatatattgtgggctccacgtaggcctgatGCGCTACGCTTATCAGGc < 1:897024‑M2/18‑1 (MQ=255) tgtgAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATAAAGACTACGt > 2:264615/1‑149 (MQ=255) gCTGGTGGAGTATGCGCAGCAGAGGTCATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATGTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAat > 1:737840/1‑149 (MQ=255) gtggtggAGTAGACGTAGCAGGGGTTAGCGCTGGAGTCGTACATTAACGTAATGGGAGCAGGTCAGATTTCTATGTGACCGGAGACGGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAata < 2:820101/148‑1 (MQ=21) tggAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGCTCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATAtt < 1:660648/149‑1 (MQ=255) ggAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTg > 1:700321/1‑149 (MQ=255) agtctccgccgcAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGaa < 1:610625/143‑1 (MQ=255) aGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGaa > 1:186323/1‑149 (MQ=255) aGTAGACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGaa < 1:597739/149‑1 (MQ=255) tataCGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGATACTGATGACAAACACAAAACTGCCTGAGGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAAGATATTGAAtt > 2:425057/1‑149 (MQ=255) tataCGCAGCAAAGGTTATCACTGGAGTCGTAAATTAACGTAAGATGATCAAGTCAGATGTCAATCTGGCCTGAGACTGATGACAAACACAAACGTGACTAATCACCTAACCTTCTAAGGCCTACATTGTTTATGCAATATATTGAAtt > 2:679960/1‑149 (MQ=255) tgaacttcagAGGTTATCGCTGGCGAAGTAAATTAACGAAAGGAGATCAGGTCAGATTTCAATCTGGCCTGAGGTTGATGACAAACACAAAACTGCCTGATACGCTACGCTTATCAAGCCTACGTGGTTTATCCACTATATTGAATTTg > 2:874196/8‑149 (MQ=255) gcagcaGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTTATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCAt < 2:481025/149‑1 (MQ=255) gagGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGTCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGGAATATATTGAATTTGCATGGTCtt < 1:695260/149‑1 (MQ=255) gTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTa < 1:517185/149‑1 (MQ=255) ttATCGCTGTGGTAGCAAATTAAAGGAAGGGGATCAAGTAAGATTTCAATCTGGCCTGAGAATGATCACAAACACCAAACGACCGGTTGCGATACGATTATCAGGCCTACGTGGGTTATGCAATATATTGAATTTGCATGGTCTTGTAg < 2:3894/149‑1 (MQ=21) tCGCTGGCGTCGTAAATTAACGTAAGGTGATAAGGTCAGAGTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGcc > 2:868680/1‑149 (MQ=255) cGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCa < 2:838189/149‑1 (MQ=255) gtcgtAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGCCTGTCGATGAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGa < 1:658057/149‑1 (MQ=25) ttAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGTTAATACGTTTAct > 2:448889/1‑148 (MQ=255) gTAGGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCa < 2:671879/149‑1 (MQ=255) gTGATCAGGTGAGACTTCAATCTGGCCTGAGACTGATGACAAACACCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTCAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCgg < 2:125976/149‑1 (MQ=255) aTCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGTCCAGATAAGACGTTCACGTCGCATCCGGCAt > 1:186800/1‑149 (MQ=255) aTCAGGTCAGATTTCAATCTGGCATGAGACTGATGACAAACACAAAACTGCCTGATGCGCGACGCTTATAAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTCTACGCCAGATAAAACGTTCACGTCGCATCCGGCAt > 2:357235/1‑149 (MQ=25) gtaaGATTTCAATCTGTCCGGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACa < 2:850074/146‑1 (MQ=255) gTCAGATTTCAATCTGGCCTGAGACTAATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAACACGATCACAGCACATCCGGCATGAACa > 2:521214/1‑149 (MQ=21) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGGGGTGAGATAATGTTGGATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACaa > 1:883508/1‑149 (MQ=25) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACaa > 1:838723/1‑149 (MQ=255) tCAGATTTCAATCGGGCCTGAGACAAATGACATACACAAAACGGACTGATGCGCTACGCTTATCAGGCCTACGTTATTTATGCACTATATTGAATTTCCATGGTCTTGTAGGCCACATAAGCCGTTCACGTCCCATCCGGCATGGACaa > 2:853777/1‑149 (MQ=18) tacgaaatcgtgctaattcaatatattgtgggctccacgtaggcctgatGCGCTACGCTTATCAGGcc < 2:883568‑M2/19‑1 (MQ=255) tacgaaatcgtgctaattcaatatattgtgggctccacgtaggcctgatGCGCTACGCTTATCAGGcc > 1:883568‑M2/50‑68 (MQ=255) taGATTGCAATCTGGCCTTAGACTGAGGACAAACACAATACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTCTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACaaa < 2:252741/148‑1 (MQ=21) cAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATg > 1:1354/1‑81 (MQ=255) cAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATg < 2:1354/81‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTTGAGGGTCTTTTAGGCCAGATAAGACGTTCTCGTCGCATCCGGCATGCACAACgcgc > 2:1101/1‑149 (MQ=21) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTTATGCAACATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAgcgc > 2:545432/1‑149 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGAAGCGCTACGCTTATCAGGCCTACGTGCTTTATGCAATATATTGCATTTGCATAGTCTTGTAGGCCAGATAAGACGTCCACAACGCATCCGGCACGAACAAAgccc > 2:484759/1‑147 (MQ=21) ttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCa < 2:186323/149‑1 (MQ=255) ttCAATCTGGCCTGAGACCGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCa < 1:33434/149‑1 (MQ=255) aaTCTGGCCTGAGACTGATGACAAACATAAAAATGCCAGATGCGCTACGCTTATCAGGCCTACGTCGTTTATGCAAAATATTAACTGTGACTGGCATTGTAGGCCAGATAAGACGTCCCCCTCGCATCCGGCACGAAAAACGCCCACtc > 2:215188/1‑148 (MQ=16) aaTCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATATGACTGTCACGTCGCATCCGGCATGAACAAAGCGCACtt < 2:868709/149‑1 (MQ=255) ggagaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATAAACAAAGCGCACTTTGTCaaaaa > 1:743255/2‑149 (MQ=255) cTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTaa < 1:747643/149‑1 (MQ=255) tgatgaCAAACACAAAACTACCTAAAGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTTCATTACCCTGGTATTGTAGGCCAGATAAGACATTCACGTCGCATCAGGCATGAACAAAGCCCCCACAGTGAAAAATATAAc > 2:350553/1‑149 (MQ=17) tgaCCAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTa < 1:57678/149‑1 (MQ=255) tgaCAAACACAAAACTGCCTGATGCACTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGCCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCGAAccaa > 2:57900/1‑147 (MQ=255) acaAAACGGCCTGATGCGCTACGCAGATCAGGCCTACGTGGTTTATGCAAGATAGTGAATTTGCATTGACTTGTAGGCCAAATAAGACATTCAGGTCGCAACCGGCATCCACAAAACGCACTTTGAGAAAAATCAAACCTACTTTTTag > 2:76946/1‑148 (MQ=255) aaatCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAAtt < 1:445762/149‑1 (MQ=255) cggcctgatGCGCTACGCTTATCAGGGCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAgg < 1:788600‑M2/140‑1 (MQ=255) ctgatGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGTGAAt > 2:313451‑M2/6‑149 (MQ=255) ttatGCGCTACGCTTATCAGGCATACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAAATCATACGTTCAAGTCGCATCCGGCATGAACAACACGCACTTTATCAAAAATCTAACCTACTTTTTAATTCAGGGAAtt > 2:652263‑M2/5‑149 (MQ=255) tgatGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTAAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGAACTTAGGCAAAAATCTAACCTATTTTTTAATTAAGGGAata > 2:537213‑M2/5‑148 (MQ=255) | TCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATT > NC_000913_3_bme_pgi/3563452‑3563733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |