New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 3828619	29 (0.620)	3 (0.070)	3/260	NT	9.6%	coding (47/1206 nt)	gltS	glutamate transporter
	?	NC_000913_3_bme_pgi	= 3828623	29 (0.650)					coding (43/1206 nt)	gltS	glutamate transporter

ATCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTGG  >  NC_000913_3_bme_pgi/3828477‑3828767                                                                                                                                                    |                                                                                                                                                 atCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTAGTAGTAGCGACAGCGCCACCAACAAACCACCCGCAACAGGTTCCGTTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGATCAGCAACGTCAGcg                                                                                                                                                <  2:19697‑M2/149‑3 (MQ=255)  tCAAAGTTGACTTCCCAGCCCATTCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCCCCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGACGACGGAATGGACCAACTTACG‑CCAGAGCCGCAACATCACcgt                                                                                                                                               <  2:16468‑M2/149‑4 (MQ=255)  tCAAAGTTGACTTCCCAGCCCATGCTTTTTTTTAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTGTGGTGTATTTCTTCAAAAAGGAGACGGAATCGACCAACCTCCG‑CCCACGCAGCATCGTCTGcgt                                                                                                                                               <  2:74415‑M2/149‑4 (MQ=255)  tCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGAAACGTCAGcgt                                                                                                                                               <  1:612230‑M2/149‑4 (MQ=255)      aGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCTACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCg                                                                                                                                           <  2:535823/149‑1 (MQ=255)             ttCCCAACCCATGCTTTTTTTCAGTACTAGTAGAGCCAGCACAACCAACAAACCACCCGCCACAGGTTCCGGTATGGTGCATTTCTTCAAAAAGGAGACTGAATGAACCAACTTACA‑CCCTGCCAGCAACGTCAACGTAGCAGcaacaa                                                                                                                                    >  2:368616/1‑149 (MQ=255)              tgccAGCCCATGCTTTTTTTCAGGACTAGGAGCGCCAGCGCCACCAACAAACCCCCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAg                                                                                                                                   <  2:270818/147‑1 (MQ=255)                        tGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTaaa                                                                                                                         <  2:594336/149‑1 (MQ=255)                                             gcgccagcgccaCCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGtt                                                                                                    >  1:761219/1‑149 (MQ=255)                                                     gccaCCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCttt                                                                                            <  2:748284/149‑1 (MQ=255)                                                       caccaACAAACCACCCACAAAAGGGTCCGGTAAGGTGTATTGCTTCAAAAAGGAGACGGAATGTACCAACTTACG‑CCCGAGCAGCAACGTCAGCCTTGCGGCAACAAGCGTTGCTAAAGTATCAACATGAACCATCGTTACTCCTTTGt                                                                                          >  2:288763/1‑149 (MQ=255)                                                           aacaaACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATcc                                                                                      >  1:865628/1‑149 (MQ=255)                                                             caacactcccGCACCCGGTTCCGGTATGGTGTTTGTCTGTTAGACGCAACTTGAAGGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGc                                                                                    <  1:202552/142‑1 (MQ=255)                                                                 ccaccCTGAACACGTTCCGGTATTGTGTATTTCTTAAAAAAGGAGACGGAATTGACCAACTTACG‑ACCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCa                                                                                <  1:176483/149‑1 (MQ=255)                                                                       gCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGATCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCttt                                                                          >  1:252942/1‑149 (MQ=255)                                                                          aCAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCAt                                                                       >  2:577963/1‑149 (MQ=255)                                                                                     gaTGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGTAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATAc                                                            <  1:275070/148‑1 (MQ=255)                                                                                         gtgtATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCa                                                        >  1:690144/1‑149 (MQ=255)                                                                                         gtgtATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTAATCCTTTGTATCAGCATAACTCTTTCATAATCGTCATACTTCa                                                        >  1:90832/1‑149 (MQ=255)                                                                                          tgtATTTCTTCAAAAAGGAGACGAAATGGACCAACTTACG‑CCCGAGTAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCTCATCACTCTTTCATACTCGTCATACTTCAt                                                       <  2:34270/149‑1 (MQ=255)                                                                                              tttCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACACCTTTGTAACCGCATCACTCTTTCATACTCGTCATACTTCATcgcg                                                   >  1:392362/1‑149 (MQ=255)                                                                                                  ttcAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGt                                               <  1:74415/149‑1 (MQ=255)                                                                                                  ttcAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGAGCAGt                                               >  1:661449/1‑149 (MQ=255)                                                                                                     aaaaaGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCCACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTCGATACTCGTCCTACTTCATCGCGCAGTGGc                                            >  2:207142/1‑149 (MQ=255)                                                                                                     aaaaaGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGc                                            >  1:255929/1‑149 (MQ=255)                                                                                                             tatggAATGTACCAAC‑CACGCCCCCAGCAGCACCGGCAGCCTTGCTGCAAACAGCGTTGCTAACGTATCCACATCAAACATTGTTCCTCTTTTGTATCCGCATCCTTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCAt                                    <  2:509648/146‑1 (MQ=255)                                                                                                             gaCGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCAt                                    <  1:730692/149‑1 (MQ=255)                                                                                                                      gACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTCCATGAACTATGa                           <  2:646968/149‑1 (MQ=255)                                                                                                                      gACCAACGTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATTACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCATCTTCATGAACTATGa                           <  2:283877/149‑1 (MQ=255)                                                                                                                       atcAACTTACG‑TCCGAGTAGTAACTTCATCGTTTTGGCAATAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTCCTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGAc                          <  1:335636/147‑1 (MQ=255)                                                                                                                         cAACTTACG‑CCCGAGCAGCAACGTCAGCGATGTCGTTATTTTCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGGACTATGAccg                        >  2:869135/1‑147 (MQ=255)                                                                                                                            cTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTa                     >  1:75820/1‑149 (MQ=255)                                                                                                                             ttACG‑GCCTAGCAGCAACGACAGCTAAGCGGCAACAAGCGTTGCTAAAGTAACGAGAAGAAACATTGTTACTCCTTTGTATCTGCAGCATTCTTTCATACTCGTCATACATCGTCGCGCAGTGGCAACTTCATGAACTATGACGGGTAt                    <  2:526833/149‑1 (MQ=255)                                                                                                                                   cccGAGCAGCAACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttg                                                                          >  2:201505‑M2/1‑18 (MQ=255)                                                                                                                                   cccGAGCAGCAACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttg                                                                          <  1:201505‑M2/90‑73 (MQ=255)                                                                                                                                        gcagcaACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttgcgggtggtttgttggtggcgctggcgctactagtactgaaaaaaagcatgggctgggaagtcaa          <  1:358025‑M2/149‑137 (MQ=255)                                                                                                                                              aCGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCt    <  2:46245/149‑1 (MQ=255)                                                                                                                                                gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGa                           <  2:5370/124‑1 (MQ=255)                                                                                                                                                gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGa                           >  1:5370/1‑124 (MQ=255)                                                                                                                                                gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACGCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTgg  <  2:612230/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 ATCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTGG  >  NC_000913_3_bme_pgi/3828477‑3828767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.