New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	19797 =	NA (NA)	53 (1.180)	39/288	0.2	94.7%	intergenic (+177/+14)	nhaR/insB1	transcriptional activator of nhaA/IS1 transposase B
	?	NC_000913_3_bme_pgi	61481 =	3 (0.070)					coding (1784/2907 nt)	rapA	RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase

GATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913_3_bme_pgi/19652‑19936                                                                                                                                                  |                                                                                                                                            gatagatTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTaa                                                                                                                                          <  1:531096/149‑1 (MQ=255)     gatTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGAc                                                                                                                                      <  2:293052/149‑1 (MQ=255)           ttGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAAc                                                                                                                                <  2:519580/149‑1 (MQ=255)               ataTTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGTATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAt                                                                                                                            <  1:371434/147‑1 (MQ=255)                  ttACCACGATTTGGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGa                                                                                                                         <  2:586556/149‑1 (MQ=255)                      cACGATTTTGACTCGGCTCGTTATTTGCCCGCTTGAGGCATTGTTTCCATATGTACGCGGGCGCATAAATAGAGGATTCTGTTTACTTCCTTGCTTGGGATGCTGAAAAGAGTAGTAAATGCTGGTAATGACTTAAACTTATTAATAgt                                                                                                                     >  2:456180/1‑149 (MQ=255)                      cACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAGAAGAGGAGTAATTGCTGGTAATGACTCCAACTTATTGATatt                                                                                                                     >  2:485393/1‑147 (MQ=255)                             ttGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                                                                              <  2:729842/149‑1 (MQ=255)                                aCTCGGTTTATTATTTGCACTTTTGAGTCATTTTTTCCATATGTACGCAGGCGAATAAATAGAGGAATCTGAATATTTCCGTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                                                           <  2:242062/149‑1 (MQ=38)                                aCTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                                                           >  2:211869/1‑149 (MQ=255)                                 cTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGCCTCCAACTTATTGATAGTGTTTTATGTTc                                                                                                          >  1:286781/1‑149 (MQ=255)                                 cTCGGCCTATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAAGAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                                                                          <  2:108430/149‑1 (MQ=255)                                  tCGGCTTATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGCGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                                                                         <  1:557500/149‑1 (MQ=255)                                    ggCTCATTATTTGCCCGCTTGGGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCCTGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATGACTAGGGTTTTTTGTTCAGa                                                                                                       >  1:659528/1‑149 (MQ=255)                                       tccttattTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAACTAAAGGAATCTGATTACTTCCTTCATGGGGCTGCTGAAAAGAGTAGTAATTACTGGTAACGACTACAACATGTGGATCGTGGTTTGTGTTCAGATac                                                                                                    >  2:6520/4‑148 (MQ=255)                                           tattTGCCCGCTTGAGACATTGTTTCCATATGTACGGGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                                                                                <  1:167585/149‑1 (MQ=255)                                                  ccGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAAc                                                                                                                                <  2:431745/110‑1 (MQ=255)                                                  ccGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAAc                                                                                                                                >  1:431745/1‑110 (MQ=255)                                                    gCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                                                                                       <  1:625353/149‑1 (MQ=255)                                                     cTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTAATTGATAGTGTTTTATGTTCAGATAAAGCCCGATGACttt                                                                                      >  1:284243/1‑149 (MQ=255)                                                           aCATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                                                                                >  1:113041/1‑149 (MQ=255)                                                           aCATTGTTTCCATATGGACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                                                                                <  1:453526/149‑1 (MQ=255)                                                            cATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                                                               >  2:428411/1‑149 (MQ=255)                                                                gTTTCCCTATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACACCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                                                                           >  2:698370/1‑149 (MQ=255)                                                                 tttCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCGTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTACTGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAAGCCCGATGACTTTGTCATGCAGCTc                                                                          >  1:723684/1‑149 (MQ=255)                                                                  ttCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTcc                                                                         <  2:21907/149‑1 (MQ=255)                                                                      atatGTACGCGGGCGAATAAATAGAGGAATCTGATTAATTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTTTCATGCAGCTCAACCg                                                                     >  2:335828/1‑149 (MQ=255)                                                                                 ggCGAATAAATAGGTGAATCTGATTACTTCCTTCATGCGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc                                                          <  2:18665/149‑1 (MQ=255)                                                                                  gCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg                                                         >  2:787825/1‑149 (MQ=255)                                                                                    gAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCCTGCAGCTCCACCGATTTTGAGAACGAc                                                       <  2:790884/149‑1 (MQ=255)                                                                                             gagGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGCGAAAGAGAGCGACTTc                                              <  2:8299/149‑1 (MQ=255)                                                                                              agGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTcc                                             <  2:141658/149‑1 (MQ=255)                                                                                                gAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTTGCATGCAGCTCCACCGCTTTTGAGAACGACAGCGACTTCGGt                                           >  2:503135/1‑149 (MQ=255)                                                                                                   tCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTccc                                        <  2:433672/149‑1 (MQ=255)                                                                                                     tGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                                                            >  2:440730/1‑95 (MQ=255)                                                                                                     tGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                                                            <  1:440730/95‑1 (MQ=255)                                                                                                      gATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGc                                     <  1:251064/149‑1 (MQ=255)                                                                                                                   aTGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGtgct                        >  2:448444/1‑149 (MQ=255)                                                                                                                   aTGGGGATGATGAAAAGAGTAGTAATTGCTGGTAATGGCTCCAACTTATTGATAGTGTTTTATGTTCAGATAAGGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGtgct                        <  2:692334/149‑1 (MQ=255)                                                                                                                       ggATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCt                    >  2:90142/1‑149 (MQ=255)                                                                                                                        gATGCAGAAAAGAGTAGTAACTGCTAGGAATGACTCCAAGTAATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTc                   <  1:215626/149‑1 (MQ=14)                                                                                                                           gCTGAAAAGAGTAGTAATTGGTGGTAATGACTCCAACTTATTGATAGTGTTTTGTTTGTTGGTAATGCTCTGTGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGa                <  1:552880/149‑1 (MQ=14)                                                                                                                           gCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTGTTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGa                >  1:717819/1‑149 (MQ=255)                                                                                                                                agagagTAGGTATTGCTGGTAATGACTCCAACTTAGTGATAGTGTTTTATGTTCAGATAATGACCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAg           <  2:266620/147‑1 (MQ=255)                                                                                                                                aaaGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCTGTGCCAGGTGCTGCCTCAGATTCAg           <  1:392076/149‑1 (MQ=255)                                                                                                                                   gagTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGtt        >  1:722810/1‑149 (MQ=40)                                                                                                                                         taATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCg  >  1:271125/1‑149 (MQ=35)                                                                                                                                         taATTGCTGGTAATGACTCCAACGTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGACCGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCGGATTCAGGTTATGCCg  >  1:267406/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                            GATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913_3_bme_pgi/19652‑19936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.