New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_KO_pgi	111477 =	NA (NA)	7 (0.200)	6/268	3.8	15.6%	noncoding (48/200 nt)	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
	?	NC_000913_3_KO_pgi	111509 =	38 (1.100)					noncoding (80/200 nt)	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAG  >  NC_000913_3_KO_pgi/111331‑111623                                                                                                                                                   |                                                                                                                                                   tAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGGCATTCGCAACCGATGcc                                                                                                                                                  >  1:562801/1‑149 (MQ=255)      aagGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATg                                                                                                                                             <  1:25105/149‑1 (MQ=255)        gggCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCg                                                                                                                                           >  2:557615/1‑149 (MQ=255)          gCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCggc                                                                                                                                         >  1:278314/1‑147 (MQ=255)           cAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCAGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGCCg                                                                                                                                        >  1:503205/1‑149 (MQ=255)             aCCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCt                                                                                                                                      >  1:348072/1‑149 (MQ=255)                      gTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCt                                                                                                                             >  2:292500/1‑149 (MQ=255)                       tGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTGGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCtt                                                                                                                            >  2:46111/1‑149 (MQ=255)                         gATGTCGTTGGTCGGTCTTAATGTCGATGTTTTTCGCCCAGCCAATGAACCGGTAATTGTGAAGCTTAAACGTCTGTAGGTCTGTTAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACTCTGGCGCGTCTTAt                                                                                                                          <  2:315729/149‑1 (MQ=255)                         gATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                          >  1:45112/1‑149 (MQ=255)                             tCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAgg                                                                                                                      <  1:484864/149‑1 (MQ=255)                              cGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGAGCCTCACGAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAgtc                                                                                                                     <  1:470514/149‑3 (MQ=37)                                 tGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACACTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa                                                                                                                  >  1:456208/1‑149 (MQ=255)                                    tcggtcTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAg                                                                                                               <  2:439265/149‑1 (MQ=255)                                     cggtcTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAgg                                                                                                              <  1:557615/149‑1 (MQ=255)                                       gtcTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCGTGATGTGACGCTGGCGCGTCTTATCCGGCCTAAAgggg                                                                                                            >  1:386976/1‑148 (MQ=255)                                           tAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTc                                                                                                        >  1:631726/1‑149 (MQ=255)                                              tGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTaa                                                                                                     <  2:253200/149‑1 (MQ=255)                                                ccGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACt                                                                                                   >  1:312428/1‑149 (MQ=255)                                                  gatgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAgg                                                                                                              >  2:555507/1‑136 (MQ=255)                                                  gatgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAgg                                                                                                              <  1:555507/136‑1 (MQ=255)                                                  gatgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCa                                                                                                 >  2:13442/1‑149 (MQ=255)                                                         ttCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATaa                                                                                          <  1:13442/149‑1 (MQ=255)                                                           ccGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAAt                                                                                        <  2:631726/149‑1 (MQ=255)                                                            cGCCAGCCAGTGAACGGGGGATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTAGCCGCATCCGACATTCGCACACGATGCCTCATGCGACGCTGGCGACTCTTATGAGGCCTAAAGGGATTTCTAACTCATTGTTaaact                                                                                       >  2:592262/1‑147 (MQ=255)                                                             gccagccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTCATGTGATTTCTAACTCATAGTTAAAttt                                                                                      >  1:176416/1‑149 (MQ=38)                                                                   caATAAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGttttt                                                                                <  1:209060/149‑1 (MQ=255)                                                                    aaTGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTg                                                                               <  2:312428/149‑1 (MQ=255)                                                                          ccGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCCTATCAGGCCCAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTTTAgcgc                                                                         >  2:106326/1‑146 (MQ=255)                                                                                 ttGCGAAGGTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAg                                                                  <  2:503205/149‑1 (MQ=255)                                                                                        gCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTTGCACACGATGCCTGGTGCGACGCTGGCGCCTCTTAACCGGCCTCAAGGGCTTTATCACCAATAGATCACTTCTTTTTTGCAGGGCGGTTAACGccgttg                                                           >  2:579504/1‑144 (MQ=16)                                                                                                          cAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTg                                         <  1:481410/149‑1 (MQ=255)                                                                                                            gATAATGCGTGTTCGTCGCATCCGACATTCGCACACGCTGCCTGATGCGACGCTGGCGCGTCTTATTAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGca                                       <  2:96948/149‑1 (MQ=39)                                                                                                            gATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCAGCCGACATTTGca                                       >  1:405495/1‑149 (MQ=255)                                                                                                             aTAAGGCGGTGTCGCCGCATCCGACGTTAGCACAGGAGGCCTGGTGCGACGCTGGCGCGTCGTAACAGGCCTAGGGAGATTTCTAACTCATTGATAAATTTGTTTTTGTCTGTCGCATAAGGCGTTCCCGCCCCCTCCGACCGTTGcac                                      >  2:498086/1‑149 (MQ=255)                                                                                                               aaGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACaa                                    <  2:567481/149‑1 (MQ=255)                                                                                                                aGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa                                               >  2:326503/1‑137 (MQ=255)                                                                                                                aGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa                                               <  1:326503/137‑1 (MQ=255)                                                                                                                     ttttCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGtt                                                             <  2:534198/118‑1 (MQ=255)                                                                                                                     ttttCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGtt                                                             >  1:534198/1‑118 (MQ=255)                                                                                                                     ttttCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGcc                              >  2:273235/1‑149 (MQ=255)                                                                                                                                   gACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCGTCCGACATTTGCACAAGCTGCCTGATGCGTCGCTGt                >  1:98799/1‑149 (MQ=255)                                                                                                                                              acGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCATGATGCGACGCTGTCCGCGTCTTAt     >  1:402401/1‑149 (MQ=255)                                                                                                                                               cGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACTCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATc    <  1:423653/149‑1 (MQ=255)                                                                                                                                                 aTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAg  <  2:348072/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAG  >  NC_000913_3_KO_pgi/111331‑111623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.