mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 27.3% | 130.6 / 47.7 | 66 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 26.5% | 118.8 / 33.9 | 68 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 25.8% | 119.6 / 30.4 | 66 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 21.8% | 80.4 / 27.1 | 56 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 101 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4284640 | NA (NA) | 5 (0.210) +56 bp |
3/170 | 3.8 | 14.2% | intergenic (‑167/+33) | yjcH/acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
| ? | NC_000913_3_pae_pgi | = 4459704 | 50 (1.260) | noncoding (30/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | = 4284634 | NA (NA) | 5 (0.200) +54 bp |
3/174 | 3.9 | NA | noncoding (73/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4284640 | NA (NA) | intergenic (‑167/+33) | yjcH/acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase | |||||
| * | ? | NC_000913_3_pae_pgi | = 4094664 | 59 (1.490) | 5 (0.200) +54 bp |
3/174 | 3.9 | 12.1% | noncoding (349/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4284640 | NA (NA) | intergenic (‑167/+33) | yjcH/acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase | |||||
| * | ? | NC_000913_3_pae_pgi | = 4094572 | 49 (1.240) | 5 (0.200) +54 bp |
3/174 | 3.9 | 14.2% | noncoding (257/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4284640 | NA (NA) | intergenic (‑167/+33) | yjcH/acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase | |||||
| * | ? | NC_000913_3_pae_pgi | = 4094480 | 47 (1.190) | 5 (0.200) +54 bp |
3/174 | 3.9 | 14.7% | noncoding (165/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4284640 | NA (NA) | intergenic (‑167/+33) | yjcH/acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase | |||||
| * | ? | NC_000913_3_pae_pgi | = 4094388 | 59 (1.490) | 5 (0.200) +54 bp |
3/174 | 3.9 | 12.1% | noncoding (73/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4284640 | NA (NA) | intergenic (‑167/+33) | yjcH/acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase | |||||
| * | ? | NC_000913_3_pae_pgi | = 4541950 | 18 (0.460) | 6 (0.160) | 6/264 | 4.2 | 19.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_pgi | = 4542246 | 34 (0.920) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_pgi | = 3427065 | NA (NA) | 6 (0.160) | 6/264 | 4.2 | NA | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913_3_pae_pgi | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_pgi | 225456 = | 4 (0.100) | 6 (0.160) | 6/264 | 4.2 | 61.6% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_pae_pgi | = 3427056 | NA (NA) | intergenic (‑23/+20) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_pgi | = 3036584 | 51 (1.290) | 5 (0.140) | 5/262 | 4.6 | 9.7% | coding (1523/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | NC_000913_3_pae_pgi | = 3036607 | 46 (1.250) | coding (1500/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||