| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 2700066 = | 113 (0.980) | 14 (0.130) | 13/250 | 11.5 | 12.3% | intergenic (+143/+51) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein |
| ? | NC_000913_3_pae_pgi | 2700100 = | 97 (0.920) | intergenic (+177/+17) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCTGCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/2700226‑2700066‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggacgcaccttAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTAGCCCTT > NC_000913_3_pae_pgi/2700100‑2700242 GGCTGCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTC < 1:1057578/150‑1 TGCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGA < 2:800866/150‑1 TGCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGA < 3:414881/150‑1 TGCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGA > 4:24640/1‑150 GCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGAC > 2:493511/1‑150 TTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCA < 1:911697/150‑1 TCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCAC < 2:1200221/150‑1 CTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCT > 1:594565/1‑150 ATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGT > 2:457013/1‑150 CGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTT < 4:18500/120‑1 CGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTT > 3:18500/1‑120 ATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGC < 1:457013/150‑1 TTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATC > 1:309645/1‑150 TTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAA > 3:291417/1‑150 ttgACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGT < 3:381300/147‑1 ACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTC < 2:309645/150‑1 TACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTA < 4:291417/150‑1 CTTAAGGTGCGTCCGGTGAACCAGTCGGACGCAGCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCACCTGTACCACAGCAAGGATGATTTTGATGACCCGCTTAATAAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAA > 4:581695/1‑150 GGTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGG > 1:5231/1‑150 GTGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGA > 1:416205/1‑150 TGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAA > 2:1066071/1‑150 TGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGA < 2:1177867/94‑1 TGCGTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGA > 1:1177867/1‑94 GTCCGGTGAACCAGTCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGAAATGC > 3:686704/1‑150 GGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTAGC < 1:455996/150‑1 GACGCACCTTAAGTACGTTTCCTTGTTTTATAAGAACAGAATGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGTTATCCGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAAATTAGCC < 1:1178036/150‑1 GCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTAGCCCTT > 1:1228087/1‑150 GGCTGCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCTGTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/2700226‑2700066‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggacgcaccttAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTAGCCCTT > NC_000913_3_pae_pgi/2700100‑2700242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |