New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 2700861	15 (0.870)	5 (0.310)	4/250	1.8	25.8%	coding (138/381 nt)	acpS	holo‑[acyl‑carrier‑protein] synthase 1
	?	NC_000913_3_pae_pgi	= 2700868	15 (0.940)					coding (131/381 nt)	acpS	holo‑[acyl‑carrier‑protein] synthase 1

GCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCACG  >  NC_000913_3_pae_pgi/2700715‑2701006                                                                                                                                                   |                                                                                                                                                  gCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGc                                                                                                                                                >  1:63704/1‑150 (MQ=255)                cgtagccgtGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTggtgcgttttc                                                                                                                                 >  4:16883‑M2/1‑139 (MQ=255)                  tagccgtGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCaccagccggtgcgttttctg                                                                                                                               <  1:3807‑M1/150‑21 (MQ=255)                  tagccgtGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCaccagccggtgcgttttctg                                                                                                                               <  1:3822‑M1/150‑21 (MQ=255)                     ccgtGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt                                                                                                                            <  3:83110/150‑1 (MQ=255)                     ccgtGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt                                                                                                                            <  3:83137/150‑1 (MQ=255)                                         catTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTa                                                                                                        <  1:99831/150‑1 (MQ=255)                                            tGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATa                                                                                                     >  2:13161/1‑150 (MQ=255)                                                      acattCATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCaccagccggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaa                                                                                           <  1:130199‑M1/148‑57 (MQ=255)                                                            aTTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCg                                                                                     <  2:63704/150‑1 (MQ=255)                                                                aaCGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCaccagccggtgcgttttctggcgaagcgttttgctgtgaaagaagccgca                                                                                                 <  4:90748‑M1/134‑51 (MQ=255)                                                                aaCGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCaccagccggtgcgttttctggcgaagcgttttgctgtgaaagaagccgca                                                                                                 >  3:90748‑M1/1‑84 (MQ=255)                                                                aaCGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCa                                                                                 >  3:73046/1‑150 (MQ=255)                                                                     cAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGa                                                                            >  4:51177/1‑150 (MQ=255)                                                                          cATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg                                                                       >  1:158293/1‑150 (MQ=255)                                                                             tGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGa                                                                    >  3:105419/1‑150 (MQ=255)                                                                               aaagatgcGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATc                                                                  >  4:95953/8‑150 (MQ=255)                                                                                              aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATgcga                                                   >  3:112125/1‑150 (MQ=255)                                                                                                   ttttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtttaatgaatgt                                              <  1:130199‑M2/150‑95 (MQ=255)                                                                                                     ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAtct                                            <  2:158293/150‑1 (MQ=255)                                                                                                         tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtt                                                        >  3:90748‑M2/1‑50 (MQ=255)                                                                                                         tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtt                                                        <  4:90748‑M2/134‑85 (MQ=255)                                                                                                                       caGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCAGTGCCTa                          >  3:111486/1‑150 (MQ=255)                                                                                                                                       cAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtttaatcaatttgaagtattcaatgatgagctcggcaaaccacggcta          <  1:3822‑M2/150‑131 (MQ=255)                                                                                                                                       cAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtttaatcaatttgaagtattcaatgatgagctcggcaaaccacggcta          <  1:3807‑M2/150‑131 (MQ=255)                                                                                                                                         gAAAACGCACCaccagccggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtttaatcaatttgaagtattcaatgatgagctcggcaaaccacggctacg        >  4:16883‑M1/1‑11 (MQ=255)                                                                                                                                               gCACCGGCTGGTGGTGCGATTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGTATCGGGCGCTCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTACCATTAGCCAcg  >  2:171015/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCACG  >  NC_000913_3_pae_pgi/2700715‑2701006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.