New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 2796251	13 (0.750)	5 (0.310)	5/254	1.5	26.9%	coding (578/663 nt)	csiR	transcriptional repressor of csiD
	?	NC_000913_3_pae_pgi	= 2796261	15 (0.930)					coding (588/663 nt)	csiR	transcriptional repressor of csiD

CTGCAAATGCGTGAACGGTTGTTTGATCTGGCGGCGCGTTATCGATTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATT  >  NC_000913_3_pae_pgi/2796115‑2796405                                                                                                                                                   |                                                                                                                                                 ttgtaaaTGCGTGAACGGTTGTTTGATCTGGCGGCGCGTTATCGATTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAAGGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACcgcgcgc                                                                                                                                               <  1:93/146‑1 (MQ=255) ctgcAAATGCGTGAACGGTTGTTTGATCTGGCGGCGCGTTATCGTTTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGcgc                                                                                                                                               >  3:32229‑M2/1‑147 (MQ=255)     aaaTGCGTGAACGGTTGTTTGATCTGGCGGCGCGTTATCGATTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGcgcgcca                                                                                                                                           >  4:29204‑M2/1‑143 (MQ=255)       aTGCGTGAACGGTTGTTTGATCTGGCGGCGCGTTATCGATTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGcgcgccagt                                                                                                                                         >  1:145008‑M2/1‑141 (MQ=255)                            cTGGCGGCGCGTTATCGATTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTa                                                                                                                    <  2:65240/150‑1 (MQ=255)                              ggcggcGCGTTATCGATTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACt                                                                                                                  >  1:178629/1‑150 (MQ=255)                                         aTCGATTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGcgcgccagtaccgccgcagtcagggtctggtgctgatcgtgtt                                                                                                       >  3:84984‑M2/1‑107 (MQ=255)                                                             cgAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGAtg                                                                                   <  1:177987/150‑1 (MQ=255)                                                                       gttCGGTGGAAATTCTGGAGGATAGACGCGATCAGCACCGGAGCCTGACTGCGGCGGTACTGGCGCGAGATACCGTGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAAtt                                                                         <  2:64549/149‑1 (MQ=255)                                                                           tcatgAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAact                                                                     <  3:123790/146‑1 (MQ=255)                                                                                                acacGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAaca                                                >  1:63621/1‑150 (MQ=255)                                                                                                      tCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGcgcgccagtaccgccgcagtcagggtctggtgctgatcgtgtttatcctccagcatttccaccgaaagcaccgttcgccgcagccagataaatc                                                    >  2:105242‑M2/1‑46 (MQ=255)                                                                                                      tCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGcgcgccagtaccgccgcagtcagggtctggtgctgatcgtgtttatcctccagcatttccaccgaaagcaccgttcgccgcagccagataaatc                                                    <  1:105242‑M2/140‑95 (MQ=255)                                                                                                      tCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGcc                                          >  4:79622/1‑150 (MQ=255)                                                                                                               gACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATaaa                                 >  3:114669/1‑150 (MQ=255)                                                                                                                  ccTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGAtggctg                                                                               <  2:135302/101‑1 (MQ=255)                                                                                                                  ccTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGAtggctg                                                                               >  1:135302/1‑101 (MQ=255)                                                                                                                            gcggTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCt                    >  3:19917/1‑150 (MQ=255)                                                                                                                                 aCTGGCGCGAGATACCGCGcgcgccagtaccgccgcagtcagggtctggtgctgatcgtgtttatcctccagcatttccaccgaaagcaccgttcgccgcagccagataaatcgataacgcgccgccagatcaaacaaccgttcacgcat               <  4:59052‑M2/150‑132 (MQ=255)                                                                                                                                     gcgcGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAAGTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCAt           >  4:35500/1‑150 (MQ=255)                                                                                                                                            aTACCGCGcgcgccagtgccgccgcagtcagggtctggtgctgatcgtgtttatcctccagcatttccaccgaaagcaccgttcgccgaagccagataaaacgataacgcgccgcaagatcaaacaaacgttcacgcatttgcagcaaat    <  1:147758‑M2/150‑143 (MQ=255)                                                                                                                                             tACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTAt   <  2:178629/150‑1 (MQ=255)                                                                                                                                               ccGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTAtt  >  2:123166/1‑149 (MQ=255)                                                                                                                                               ccGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTAtt  <  1:123166/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CTGCAAATGCGTGAACGGTTGTTTGATCTGGCGGCGCGTTATCGATTTATCTGGCTGCGGCGAACGGTGCTTTCGGTGGAAATGCTGGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATT  >  NC_000913_3_pae_pgi/2796115‑2796405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.