breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_pae_pgi526,7920AC28.7% 174.4 / 95.8 131S1178R (AGC→CGC) rhsDRhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*NC_000913_3_pae_pgi526,7960CG27.2% 222.4 / 103.2 128A1179G (GCG→GGG) rhsDRhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*NC_000913_3_pae_pgi526,8000AG26.4% 221.8 / 79.2 130E1180E (GAA→GAG) rhsDRhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*NC_000913_3_pae_pgi4,295,3200CT21.0% 239.5 / 63.1 143intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 42 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 1207790 =77 (0.840)15 (0.180) 14/250 7.3 17.4% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_pae_pgi 1209619 = 74 (0.910)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913_3_pae_pgi = 16731NA (NA)10 (0.180)
+56 bp		 5/170 8.6 13.7% intergenic (+174/+20) insL1/hokC IS186 transposase/toxic membrane protein, small
?NC_000913_3_pae_pgi = 609439 105 (1.140)intergenic (+262/+20) insL1/entD IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
* ? NC_000913_3_pae_pgi = 120780578 (0.850)9 (0.110) 8/250 10.0 11.2% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_pae_pgi = 1209602 74 (0.910)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913_3_pae_pgi 3423823 =NA (NA)12 (0.140) 8/270 10.7 12.8% intergenic (‑36/+57) rrfD/rrlD 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon
?NC_000913_3_pae_pgi = 3946688 85 (0.930)intergenic (+81/‑12) rrlC/rrfC 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
* ? NC_000913_3_pae_pgi 2726200 =NA (NA)12 (0.140) 8/270 10.7 NA intergenic (‑12/+81) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
?NC_000913_3_pae_pgi 2726224 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
* ? NC_000913_3_pae_pgi = 22874460 (0.650)12 (0.140) 8/270 10.7 17.3% intergenic (+82/‑12) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
?NC_000913_3_pae_pgi 2726224 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
* ? NC_000913_3_pae_pgi = 404068382 (0.890)22 (0.240) 7/278 11.6 21.9% intergenic (+47/+223) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
?NC_000913_3_pae_pgi = 4213162 76 (0.840)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
* ? NC_000913_3_pae_pgi 1886815 =123 (1.340)6 (0.070) 6/260 11.6 5.4% intergenic (+5/+49) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
?NC_000913_3_pae_pgi 1886858 = 95 (1.120)intergenic (+48/+6) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
* ? NC_000913_3_pae_pgi = 381669NA (NA)6 (0.070) 6/268 11.8 NA coding (319/366 nt) insC1 IS2 repressor TnpA
?NC_000913_3_pae_pgi = 381695 NA (NA)coding (345/366 nt)
coding (22/906 nt)		 insC1
insD1		 IS2 repressor TnpA
IS2 transposase TnpB
* ? NC_000913_3_pae_pgi = 394682426 (0.280)9 (0.100) 6/278 12.2 14.3% intergenic (+5/‑48) rrfC/aspT 5S ribosomal RNA of rrnC operon/tRNA‑Asp
?NC_000913_3_pae_pgi = 4040681 82 (0.910)intergenic (+45/+225) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B