New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 427762	81 (1.360)	4 (0.070)	4/264	7.9	5.1%	coding (116/1848 nt)	secD	SecYEG protein translocase auxillary subunit
	?	NC_000913_3_pae_pgi	= 427779	72 (1.280)					coding (133/1848 nt)	secD	SecYEG protein translocase auxillary subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTGCGCGCTCGTGAAGCATTAATGGGC  >  NC_000913_3_pae_pgi/427632‑427925                                                                                                                                                    |                                                                                                                                                   ccTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTcgccgc                                                                                                                                                   <  1:858369/149‑1 (MQ=255)  cTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCgccgcc                                                                                                                                                  >  1:644508/1‑149 (MQ=255)    aaGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAg                                                                                                                                                >  2:308729/1‑149 (MQ=255)      gggAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTTATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGGATCGCCGCCAGTg                                                                                                                                              >  1:616694/1‑149 (MQ=255)       ggAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGa                                                                                                                                             >  2:15872/1‑149 (MQ=255)       ggAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGa                                                                                                                                             <  2:936842/149‑1 (MQ=255)            tGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCaaa                                                                                                                                        >  2:273507/1‑149 (MQ=255)             gCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAAc                                                                                                                                       <  1:854124/149‑1 (MQ=255)             gCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAAc                                                                                                                                       >  1:234829/1‑149 (MQ=255)                gtgtTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCt                                                                                                                                    <  1:308729/149‑1 (MQ=255)                gtgtTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGAGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCt                                                                                                                                    <  2:930468/149‑1 (MQ=255)                    tAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATc                                                                                                                                <  2:644508/149‑1 (MQ=255)                     aaaCCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATcc                                                                                                                               <  2:876143/149‑1 (MQ=255)                       aCCTTTAGCCTTTGTGGAAGGACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAg                                                                                                                             <  2:640562/149‑1 (MQ=255)                        ccGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGCTCCGGCTGTTCAGATCACTGGTGCGCGCGGAGGCGCCGCCAGTGAGCAAACGCTGATGCAgg                                                                                                                            >  2:429972/1‑149 (MQ=255)                             aTCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCCGTGAGCAAACGCTGATCCAGGTccgg                                                                                                                       >  2:12841/1‑147 (MQ=255)                              tCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCa                                                                                                                                                 >  2:39474/1‑122 (MQ=255)                              tCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCa                                                                                                                                                 <  1:39474/122‑1 (MQ=255)                                cTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTAGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGaaa                                                                                                                    >  1:346102/1‑149 (MQ=255)                                cTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTAAGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGaca                                                                                                                    >  1:56346/1‑147 (MQ=255)                                 tttGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGaaaa                                                                                                                   <  1:13533/149‑1 (MQ=255)                                  ttGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAAc                                                                                                                  <  1:464516/149‑1 (MQ=255)                                    gtgGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGATGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGGTCCAGGTCCAGAGAAAGt                                                                                                                >  1:137741/1‑149 (MQ=255)                                     tgGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAGCCGCTGATCCAGCTCAAGAAAGCGtt                                                                                                               <  2:234829/149‑1 (MQ=255)                                      ggAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTa                                                                                                              >  1:236385/1‑149 (MQ=255)                                      ggAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTa                                                                                                              <  1:1021431/149‑1 (MQ=255)                                      ggAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCAAAACATGCTTGGTGAGGATGCGGCCATCCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAAGGCTGATCCAGGTCCAGAAAACGTTa                                                                                                              >  1:1034490/1‑149 (MQ=255)                                      ggAAGTACGGCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTCCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCGGATCCAGGTCCAGAAAACGTTa                                                                                                              <  2:983136/149‑1 (MQ=255)                                       gAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCAAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGTTGCGCGCGAAGACGCCCCCAGTGCGCAAACGCTGATCCCGGTCCAGAACCCGttcc                                                                                                             >  2:473579/1‑147 (MQ=255)                                           tACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCa                                                                                                                        <  1:1032884/134‑1 (MQ=255)                                           tACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCa                                                                                                                        >  2:1032884/1‑134 (MQ=255)                                             cgccATGCTGTTCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACaagaag                                                                                                       <  2:616694/146‑1 (MQ=255)                                             cGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACaagaag                                                                                                       <  2:1046223/149‑1 (MQ=255)                                              gTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGGAAACGTTACAagaaga                                                                                                      >  1:215773/1‑149 (MQ=255)                                               tCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTTAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAgaagaa                                                                                                     >  1:678252/1‑149 (MQ=255)                                                   gCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGaaaaaa                                                                                                 >  2:345026/1‑149 (MQ=255)                                                    cTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAAt                                                                                                <  2:574873/149‑1 (MQ=255)                                                      gATGGTGGTGAGTGTCATGGGTGTGCTGTATGCGTTTCCCAACCTGTTGGGTGAGGATCCGGCTGTTCAGATCACTGTTGCGCGCGGAGTCGCAGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAATCGTTACAAGAAAAAAAAATaa                                                                                              <  2:45615/149‑1 (MQ=255)                                                             gtgATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTaa                                                                                       <  1:965786/149‑1 (MQ=255)                                                                    tCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCtgtg                                                                                <  1:273507/149‑1 (MQ=255)                                                                    tCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACCAGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCtgtg                                                                                <  1:776354/149‑1 (MQ=255)                                                                       tCGGGCTGCTGTATGCGCTTCCCACCCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCa                                                                             <  1:405946/149‑1 (MQ=255)                                                                          gtgtgctgTAGGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCTCCGCCAGTGAGCAAACGCTGATCCAGGTCCACAAAACGTTACAATAAGAAAAAATAACTGCTAAGTCTGTGGCACTg                                                                          <  2:228608/146‑1 (MQ=255)                                                                          gTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATACCTGCTAAGTCTGTGTCACTg                                                                          >  2:32367/1‑149 (MQ=255)                                                                               ctgTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTa                                                                                                              >  1:1000305/1‑108 (MQ=255)                                                                               ctgTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTa                                                                                                              <  2:1000305/108‑1 (MQ=255)                                                                               ctgTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAaga                                                                     >  2:73981/1‑149 (MQ=255)                                                                                    tGCGCTTCCCCACCTGTTTGGTGCGGCTCCGGCTGATCAGACCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGgcg                                                                <  1:195077/149‑1 (MQ=255)                                                                                    tGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGgcg                                                                <  1:800492/149‑1 (MQ=255)                                                                                         ttCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTAtt                                                           <  1:15872/149‑1 (MQ=255)                                                                                           cccAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAg                                                                                                                                            >  1:679372/1‑66 (MQ=255)                                                                                           cccAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAg                                                                                                                                            <  2:679372/66‑1 (MQ=255)                                                                                            ccAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTTGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGCTCCAGGTCCAGAAAACGTTACAAGAAGAAACAATAACGTCTTAGTCTGTGGCACTGGAAGAGGGCGCTATTCtt                                                        <  1:523416/149‑1 (MQ=255)                                                                                             cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAAc                                                                                                                  <  1:507973/90‑1 (MQ=255)                                                                                             cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAAc                                                                                                                  >  2:507973/1‑90 (MQ=255)                                                                                             cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTc                                                          >  1:1036503/1‑146 (MQ=255)                                                                                             cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTc                                                          <  2:1036503/146‑1 (MQ=255)                                                                                             cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTg                                                       >  1:539927/1‑149 (MQ=255)                                                                                             cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTg                                                       >  2:591233/1‑149 (MQ=255)                                                                                              aaCCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTgc                                                      >  2:893138/1‑149 (MQ=255)                                                                                                ccTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTgcgc                                                    >  1:10859/1‑149 (MQ=255)                                                                                                 cTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTgcgcg                                                   >  1:592042/1‑149 (MQ=255)                                                                                                   gTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGATACAAGAAGAAAAAATAACTACTAAGTCTGCGGCACTGGAAGAGGGCGCAAATCTTGAGCGCt                                                 >  1:132754/1‑149 (MQ=255)                                                                                                          gAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTc                                          <  2:236385/149‑1 (MQ=255)                                                                                                          gAGGATCCGGCTGTTCAGATCACTGGTACGCGCGGAGTAGCCACCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTATGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTc                                          >  2:10052/1‑149 (MQ=255)                                                                                                           aggtgccGGCTGTTCAGAGCACTGGTGCGGGCGGAGTCGCAGCCAGTGAGAAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTcc                                         <  2:137741/144‑1 (MQ=255)                                                                                                            gtaTCCGGCGGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGCCTCCa                                        <  1:368401/147‑1 (MQ=255)                                                                                                             gATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAACAGGGCGCTATTCTTGCGCGCTTCGACTCCAc                                       >  2:724967/1‑149 (MQ=255)                                                                                                                  ggCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCtt                                                        >  1:851398/1‑127 (MQ=255)                                                                                                                  ggCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCtt                                                        <  2:851398/127‑1 (MQ=255)                                                                                                                  ggCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGaca                                  >  2:414259/1‑149 (MQ=255)                                                                                                                     tGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACAccc                               >  2:133274/1‑149 (MQ=255)                                                                                                                        tCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGt                            >  1:914970/1‑149 (MQ=255)                                                                                                                           gctCAATGGTGCGGCCGGAGTCGCCGCCATTGAGGAAACGCTGTTCCAGGGCCATAAAACGTTTCAAGCAGAAATATTAACTGCTAAGTCTGTGGCTCTGGAAGAGGCCGCTATGCTTGCAAGCGTCGCTTCCACTGACACCCAGTTgc                         <  2:545769/147‑1 (MQ=255)                                                                                                                           gATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTgc                         <  2:70639/149‑1 (MQ=255)                                                                                                                            aTCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTgcg                        >  2:651792/1‑149 (MQ=255)                                                                                                                            aTCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAAGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTgcg                        >  1:107931/1‑149 (MQ=255)                                                                                                                                cTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTGCGCGCt                    >  1:905145/1‑149 (MQ=255)                                                                                                                                                cgccgcCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTGCGCGCTCGTGAAGCATTAAttg    <  2:10859/149‑3 (MQ=255)                                                                                                                                                  ccgccAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACCCCCAGTTGCGCGCTCGTGAAGCATTAATGGGc  >  2:857752/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTGCGCGCTCGTGAAGCATTAATGGGC  >  NC_000913_3_pae_pgi/427632‑427925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.