breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
RA 2,856,886 T→G S297A (TCG→GCG)  hdfR_4 → HTH‑type transcriptional regulator HdfR
JC 4,257,352 +GCGGCCGC intergenic (‑281/+7) CJ019_03991 ← / ← CJ019_03994 putative ABC transporter ATP‑binding protein/hypothetical protein
RA 5,756,060 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ ACB122 80711 80839 129 9 [8] [8] 9 [gcvA_2] [gcvA_2]
* * ÷ ACB122 88000 88062 63 9 [8] [7] 10 [CJ019_00094]–[CJ019_00095] [CJ019_00094],[CJ019_00095]
* * ÷ ACB122 213571 213678 108 9 [7] [7] 9 [CJ019_00185] [CJ019_00185]
* * ÷ ACB122 277609 277674 66 10 [8] [8] 10 [tauD_2] [tauD_2]
* * ÷ ACB122 329237 329352 116 9 [8] [8] 9 [CJ019_00302] [CJ019_00302]
* * ÷ ACB122 346125 346219 95 9 [7] [8] 9 [btuD_1] [btuD_1]
* * ÷ ACB122 492244 492330 87 9 [4] [7] 11 uvrY/potA_1 Response regulator UvrY/Spermidine/putrescine import ATP‑binding proteinPotA
* * ÷ ACB122 517195 517271 77 10 [5] [8] 9 tyrS/birA Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
* * ÷ ACB122 607303 607397 95 9 [8] [8] 10 dxs/ispA 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/Farnesyl diphosphate synthase
* * ÷ ACB122 641254 641356 103 9 [8] [8] 10 [acoR_2] [acoR_2]
* * ÷ ACB122 661104 661200 97 9 [7] [7] 9 yfhM/CJ019_00619 Alpha‑2‑macroglobulin/hypothetical protein
* * ÷ ACB122 674241 674375 135 9 [8] [5] 9 [nimR_1] [nimR_1]
* * ÷ ACB122 690113 690203 91 9 [6] [7] 9 [bauC] [bauC]
* * ÷ ACB122 856898 857045 148 9 [8] [7] 11 [hemH]–[uraA] [hemH],[uraA]
* * ÷ ACB122 1117530 1117649 120 9 [8] [8] 10 gcvT_1 Aminomethyltransferase
* * ÷ ACB122 1119650 1119715 66 10 [8] [6] 15 tdcG_2/gcvP_1 L‑serine dehydratase TdcG/Glycine dehydrogenase (decarboxylating)
* * ÷ ACB122 1304740 1304866 127 10 [7] [8] 9 [rapA] [rapA]
* * ÷ ACB122 1360621 1360869 249 9 [8] [7] 9 [CJ019_01275] [CJ019_01275]
* * ÷ ACB122 1376298 1376336 39 9 [8] [7] 9 CJ019_01289 hypothetical protein
* * ÷ ACB122 1396620 1396679 60 9 [7] [4] 9 [mcpU_1] [mcpU_1]
* * ÷ ACB122 1411268 1411326 59 9 [8] [8] 10 [purC] [purC]
* * ÷ ACB122 1457213 1457264 52 11 [8] [4] 9 [algL]–[algX] [algL],[algX]
* * ÷ ACB122 1492477 1492568 92 9 [8] [8] 9 [CJ019_01406] [CJ019_01406]
* * ÷ ACB122 1499935 1500072 138 10 [8] [7] 9 [petC]–[sspA] [petC],[sspA]
* * ÷ ACB122 1537416 1537590 175 9 [8] [8] 10 [mdfA] [mdfA]
* * ÷ ACB122 1585633 1585716 84 11 [7] [8] 9 CJ019_01493 hypothetical protein
* * ÷ ACB122 1608691 1608786 96 12 [8] [8] 9 CJ019_01513 hypothetical protein
* * ÷ ACB122 1705089 1705175 87 9 [8] [8] 9 ppc/adk Phosphoenolpyruvate carboxylase/Adenylate kinase
* * ÷ ACB122 1833084 1833185 102 9 [8] [8] 9 [resA_1]–[CJ019_01751] [resA_1],[CJ019_01751]
* * ÷ ACB122 1835836 1835890 55 11 [7] [8] 9 barA Signal transduction histidine‑protein kinaseBarA
* * ÷ ACB122 1914560 1914638 79 10 [7] [8] 10 [ppsC_1] [ppsC_1]
* * ÷ ACB122 1940797 1940944 148 9 [8] [5] 9 CJ019_01857/gshAB hypothetical protein/Glutathione biosynthesis bifunctional proteinGshAB
* * ÷ ACB122 2092961 2093059 99 9 [7] [6] 9 rcsC_3/CJ019_01993 Sensor histidine kinase RcsC/hypothetical protein
* * ÷ ACB122 2288822 2288922 101 10 [8] [4] 9 CJ019_02171/CJ019_02172 hypothetical protein/hypothetical protein
* * ÷ ACB122 2393570 2393614 45 12 [6] [7] 13 [dgt] [dgt]
* * ÷ ACB122 2471398 2471525 128 10 [8] [7] 9 [CJ019_02330] [CJ019_02330]
* * ÷ ACB122 2786768 2786838 71 9 [8] [8] 9 CJ019_02632/CJ019_02633 hypothetical protein/hypothetical protein
* * ÷ ACB122 2930760–2932410 2932410 1–1651 10 [8] [7] 9 CJ019_02768 CJ019_02768
* * ÷ ACB122 3046208 3046313 106 9 [8] [8] 9 [rcsC_5]–[degU_2] [rcsC_5],[degU_2]
* * ÷ ACB122 3145275 3145384 110 9 [8] [8] 9 livH_4 High‑affinity branched‑chain amino acidtransport system permease protein LivH
* * ÷ ACB122 3164789 3164922 134 9 [8] [8] 9 bdhA_1 D‑beta‑hydroxybutyrate dehydrogenase
* * ÷ ACB122 3280255 3280343 89 9 [8] [8] 9 [CJ019_03085] [CJ019_03085]
* * ÷ ACB122 3459857 3459932 76 9 [8] [7] 10 CJ019_03284 hypothetical protein
* * ÷ ACB122 3769369 3769471 103 9 [8] [5] 9 [CJ019_03581] [CJ019_03581]
* * ÷ ACB122 3839288 3839401 114 9 [8] [7] 9 [argP_2] [argP_2]
* * ÷ ACB122 4143644 4143840 197 9 [8] [8] 9 [lrp_3] [lrp_3]
* * ÷ ACB122 4163777 4163880 104 9 [7] [8] 11 katG/leuO_2 Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
* * ÷ ACB122 4344780 4344830 51 10 [8] [7] 10 nmoA Nitronate monooxygenase
* * ÷ ACB122 4521587 4521718 132 10 [8] [7] 9 [CJ019_04289] [CJ019_04289]
* * ÷ ACB122 4543576 4543679 104 9 [7] [8] 10 preA/rutR_2 NAD‑dependent dihydropyrimidine dehydrogenasesubunit PreA/HTH‑type transcriptional regulator RutR
* * ÷ ACB122 4732421 4732487 67 11 [8] [5] 10 gltA/CJ019_04468 Citrate synthase/hypothetical protein
* * ÷ ACB122 4790386 4790441 56 9 [7] [7] 9 dat/qseC_3 Diaminobutyrate‑‑2‑oxoglutarateaminotransferase/Sensor protein QseC
* * ÷ ACB122 4801909 4802185 277 9 [8] [8] 9 CJ019_04509/dsbD_2 hypothetical protein/Thiol:disulfide interchange protein DsbD
* * ÷ ACB122 4846351 4846501 151 9 [8] [6] 9 recR/ybaB Recombination protein RecR/Nucleoid‑associated protein YbaB
* * ÷ ACB122 4883516 4883627 112 9 [8] [4] 10 [hyi] [hyi]
* * ÷ ACB122 4944888 4944973 86 10 [6] [7] 9 [CJ019_04642] [CJ019_04642]
* * ÷ ACB122 5156451 5156600 150 9 [8] [7] 17 CJ019_04852/CJ019_04853 hypothetical protein/Beta‑ketodecanoyl‑[acyl‑carrier‑protein]synthase
* * ÷ ACB122 5167208 5167232 25 9 [8] [4] 12 fadD_1/fadD_2 Long‑chain‑fatty‑acid‑‑CoA ligase/Long‑chain‑fatty‑acid‑‑CoA ligase
* * ÷ ACB122 5188812 5188896 85 12 [8] [8] 9 [CJ019_04882]–[pxpC_2] [CJ019_04882],[pxpC_2]
* * ÷ ACB122 5193577 5193691 115 12 [8] [8] 10 [gltR_4]–[CJ019_04888] [gltR_4],[CJ019_04888]
* * ÷ ACB122 5250763 5250859 97 9 [8] [4] 9 [CJ019_04947] [CJ019_04947]
* * ÷ ACB122 5529635 5529747 113 9 [6] [8] 9 [nadE] [nadE]
* * ÷ ACB122 5550459 5550585 127 11 [4] [4] 9 CJ019_05227/purA hypothetical protein/Adenylosuccinate synthetase
* * ÷ ACB122 5645604 5645673 70 13 [8] [8] 9 CJ019_05302/CJ019_05303 hypothetical protein/hypothetical protein
* * ÷ ACB122 5809498 5809680 183 9 [8] [8] 9 [pilT] [pilT]
* * ÷ ACB122 5890384 5890449 66 9 [7] [8] 9 CJ019_05517/czcA_3 hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA
* * ÷ ACB122 5895747 5895859 113 9 [8] [8] 9 [CJ019_05521] [CJ019_05521]
* * ÷ ACB122 5977055 5977109 55 9 [6] [7] 9 [sasA_19] [sasA_19]
* * ÷ ACB122 6020515 6020594 80 9 [8] [7] 9 ycaD_4/puuC_2 putative MFS‑type transporter YcaD/NADP/NAD‑dependent aldehyde dehydrogenase PuuC