breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
MC JC 205,308 Δ31 bp coding (20167‑20197/28449 nt) CJ019_00185 → hypothetical protein
RA 3,065,508 G→A V53M (GTG→ATG)  rcsC_6 → Sensor histidine kinase RcsC
RA 3,440,343 A→C S18R (AGC→CGC)  CJ019_03266 → hypothetical protein
RA 3,892,845 C→A intergenic (‑62/‑393) CJ019_03683 ← / → gapN hypothetical protein/NADP‑dependent glyceraldehyde‑3‑phosphatedehydrogenase
RA 3,957,240 C→T G137R (GGG→AGG)  dmlR_13 ← HTH‑type transcriptional regulator DmlR
RA 4,045,783 C→T G101D (GGC→GAC)  argE_1 ← Acetylornithine deacetylase
JC 4,257,352 +GCGGCCGC intergenic (‑281/+7) CJ019_03991 ← / ← CJ019_03994 putative ABC transporter ATP‑binding protein/hypothetical protein
RA 5,756,060 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ ACB122 80688 80874 187 29 [27] [27] 28 [gcvA_2] [gcvA_2]
* * ÷ ACB122 87969 88060 92 28 [27] [25] 33 [CJ019_00094]–[CJ019_00095] [CJ019_00094],[CJ019_00095]
* * ÷ ACB122 161211 161447–161315 105–237 31 [26] [24] 28 [uctC_1] [uctC_1]
* * ÷ ACB122 213561 213710 150 29 [27] [27] 29 [CJ019_00185] [CJ019_00185]
* * ÷ ACB122 329234 329371 138 30 [25] [27] 28 [CJ019_00302] [CJ019_00302]
* * ÷ ACB122 492221 492340 120 28 [27] [26] 28 uvrY/potA_1 Response regulator UvrY/Spermidine/putrescine import ATP‑binding proteinPotA
* * ÷ ACB122 517190 517304 115 40 [25] [27] 29 tyrS/birA Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
* * ÷ ACB122 607294 607400 107 28 [27] [21] 28 dxs/ispA 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/Farnesyl diphosphate synthase
* * ÷ ACB122 674245 674412 168 29 [22] [27] 28 [nimR_1]–[mcpH_2] [nimR_1],[mcpH_2]
* * ÷ ACB122 1360592 1360997 406 29 [23] [27] 28 [CJ019_01275] [CJ019_01275]
* * ÷ ACB122 1396583 1396702 120 28 [25] [27] 28 [CJ019_01313]–[mcpU_1] [CJ019_01313],[mcpU_1]
* * ÷ ACB122 1457190 1457313 124 30 [27] [25] 29 [algL]–[algX] [algL],[algX]
* * ÷ ACB122 1492450 1492683 234 30 [27] [27] 28 [CJ019_01406]–[zapE_1] [CJ019_01406],[zapE_1]
* * ÷ ACB122 1537393 1537600 208 28 [27] [26] 31 [mdfA] [mdfA]
* * ÷ ACB122 1585625 1585700 76 28 [26] [24] 31 CJ019_01493 hypothetical protein
* * ÷ ACB122 1705082 1705253 172 29 [27] [27] 33 ppc/adk Phosphoenolpyruvate carboxylase/Adenylate kinase
* * ÷ ACB122 1833104 1833193 90 28 [25] [25] 28 [resA_1]–[CJ019_01751] [resA_1],[CJ019_01751]
* * ÷ ACB122 1835823 1835934 112 28 [25] [27] 30 barA Signal transduction histidine‑protein kinaseBarA
* * ÷ ACB122 1914570 1914680 111 31 [26] [27] 28 [ppsC_1]–[CJ019_01830] [ppsC_1],[CJ019_01830]
* * ÷ ACB122 2275807 2275842 36 28 [27] [27] 28 yodB_1/PP_RS08750 Cytochrome b561/tRNA‑Val
* * ÷ ACB122 2288835 2288936 102 28 [25] [26] 30 CJ019_02171/CJ019_02172 hypothetical protein/hypothetical protein
* * ÷ ACB122 2830089 2830311 223 30 [27] [25] 47 [gabD1]–[namA_3] [gabD1],[namA_3]
* * ÷ ACB122 3046188 3046332 145 30 [26] [27] 28 [rcsC_5]–[degU_2] [rcsC_5],[degU_2]
* * ÷ ACB122 3305710 3305834 125 28 [26] [27] 28 [CJ019_03107] [CJ019_03107]
* * ÷ ACB122 3459848 3459927 80 28 [25] [24] 28 CJ019_03284 hypothetical protein
* * ÷ ACB122 3769402 3769493 92 29 [26] [27] 28 CJ019_03581/CJ019_03582 hypothetical protein/hypothetical protein
* * ÷ ACB122 4521583 4521703 121 28 [26] [26] 30 [CJ019_04289] [CJ019_04289]
* * ÷ ACB122 4666872 4667046 175 30 [27] [25] 30 [btuB_4]–[chrR] [btuB_4],[chrR]
* * ÷ ACB122 4732414 4732505 92 28 [27] [27] 28 [CJ019_04468] [CJ019_04468]
* * ÷ ACB122 4846395 4846501 107 28 [15] [25] 29 recR/ybaB Recombination protein RecR/Nucleoid‑associated protein YbaB
* * ÷ ACB122 4944878 4945019 142 28 [26] [27] 28 [CJ019_04642] [CJ019_04642]
* * ÷ ACB122 5193566 5193716 151 28 [27] [25] 28 [gltR_4]–[CJ019_04888] [gltR_4],[CJ019_04888]
* * ÷ ACB122 5477756 5477849 94 28 [25] [19] 29 purH/purD Bifunctional purine biosynthesis protein PurH/Phosphoribosylamine‑‑glycine ligase
* * ÷ ACB122 5550458 5550599 142 28 [26] [27] 30 CJ019_05227/purA hypothetical protein/Adenylosuccinate synthetase
* * ÷ ACB122 5895756 5895867 112 30 [27] [27] 30 [CJ019_05521] [CJ019_05521]