New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3338351 =	55 (1.350)	4 (0.110)	4/270	5.2	7.8%	coding (276/1434 nt)	rpoN	RNA polymerase, sigma 54 (sigma N) factor
	?	CP009273	3338383 =	44 (1.160)					coding (308/1434 nt)	rpoN	RNA polymerase, sigma 54 (sigma N) factor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGAAACC  >  CP009273/3338241‑3338528                                                                                                                                               |                                                                                                                                                  aTCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACAt                                                                                                                                             <  2:123146/149‑1 (MQ=255)  tCGACCCCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCTGCAAGAGCCGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGAc                                                                                                                                                  <  1:39964/143‑1 (MQ=255)  tCGACACCCGCGAAACGCAAGACAGCGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGCAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGAc                                                                                                                                                  >  1:230778/1‑143 (MQ=255)        ccccCGAAACGCAAGNCAGNGNANCNCTGGACATCGACGATGCGCTCGAAGAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgacgac                                                                                                                                      <  2:478493/149‑1 (MQ=255)        cccGCGAAACGCAAGACAGTTAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgacgac                                                                                                                                      <  2:462338/149‑1 (MQ=255)                  gccaGACAGTGAAACGCTGGACACCGCCGCCGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCgg                                                                                                                            <  2:240052/146‑1 (MQ=255)                   cAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAggt                                                                                                                                 >  1:373739/1‑141 (MQ=255)                    aaGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTc                                                                                                                          <  2:540427/149‑1 (MQ=255)                     aGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGc                                                                                                                               <  1:88670/143‑1 (MQ=255)                        cAGTGAAACGCTGGACACCGCCGACGCGCTCGGACACAAAGAGATGCCGGAAGGGCTGCCGCTCGATGCGAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCAGCCGCGGTGACTACATTGACGACGAGCTGCCGGTCTagc                                                                                                                      <  2:328290/149‑3 (MQ=255)                         aGTGCAACGCCGGACACCGGCGACGGGCCCGGGCGAAAAAAGATGCCGGAGCGTCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCa                                                                                                                     <  2:270494/149‑1 (MQ=255)                          gTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACATCATTTCAACCGCTTGTAGGTAGCTAAACACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAg                                                                                                                    <  2:342721/149‑1 (MQ=255)                            gacaCGCTGGACACCGCCGACGCGCGCGAACAAAACGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAggg                                                                                                                  <  2:220927/146‑1 (MQ=255)                            gAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCAGGCACCAGCGGTGACTACATTGAGGACGAGCTGCCGGTCTACCCggg                                                                                                                  >  2:558215/1‑149 (MQ=255)                                          cgccgACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGa                                                                                                    >  2:454132/1‑149 (MQ=255)                                              caCGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCtt                                                                                                <  2:49408/148‑1 (MQ=255)                                               aCGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAg                                                                                                     >  1:532470/1‑143 (MQ=255)                                                ggcgcTCGAACAAAAAGAGATGCCGGAAGAGCTGCAGCTCGATGCCAGTTGGGAAACCATTTACACCGCTGGGCCACCATCCGGCACCAGCGGTGGCTACATTGACGCAGAGCTGCCGGTCTCCACGGGCGAAacggacaaca                                                                                                    >  1:112695/2‑136 (MQ=255)                                                  cgcTCGAACAAGAAGAGAGGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCCACCAGGGCGAAACGACGCAGAcc                                                                                                  >  1:536686/1‑143 (MQ=255)                                                    cTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGa                                                                                          <  2:421906/149‑1 (MQ=255)                                                                   aTGCCGGAAGAGCTGCCGCTCGATGCACGTTGGGTCACCACTTACTCCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCa                                                                           <  2:306900/149‑1 (MQ=255)                                                                     gCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAgg                                                                         >  2:689252/1‑149 (MQ=255)                                                                         gAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCa                                                                           <  1:546974/143‑1 (MQ=255)                                                                               cTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGac                                                               <  2:642810/149‑1 (MQ=255)                                                                                  ccGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCt                                                                  >  1:476893/1‑143 (MQ=255)                                                                                    gCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGCCGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGGCACCGt                                                          >  2:457114/1‑149 (MQ=255)                                                                                    gCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTCCCTGATTTGGCCGGTTGAGCTgc                                                                >  1:48915/1‑142 (MQ=255)                                                                                     cccgctGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGtt                                                         <  2:264592/144‑1 (MQ=255)                                                                                            ccAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGac                                                  <  2:543007/149‑1 (MQ=255)                                                                                                 tGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGa                                                   <  1:384559/143‑1 (MQ=255)                                                                                                      cacCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGCCACCGGTTTCCGACCCTGACcgcg                                        >  2:597027/1‑149 (MQ=255)                                                                                                       acCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACGCCGTTTTCCGACACTGACCgcgc                                       >  2:58368/1‑149 (MQ=255)                                                                                                           tttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTAtt                                   <  2:122747/149‑1 (MQ=255)                                                                                                           tttACACCGCTGGTACACCATCCGGCACAAGCGGTGACTACATTGACGATGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGCCACCGTTTTCCGCCACTGACcgc                                         >  1:622157/1‑143 (MQ=255)                                                                                                             cacacCCCTGGTACACCATCCCGCACCAGCGGTGACTACATTGCCGACGACCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCATGTTGAGCTGACACCGTTTTCCGACACTGACCgcgc                                       <  1:166175/142‑1 (MQ=255)                                                                                                                 ccGCTGGTACACCATCCGGCACCAGCGGTGACTGCATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACAGACCGCGCTATGGCTAcc                             >  2:450571/1‑149 (MQ=255)                                                                                                                     tGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGCTTCAGATGAAACCGTTTTCCGACCCTCACCGCGCAATCGCTa                               >  1:17423/1‑143 (MQ=255)                                                                                                                          cacCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTTCCTCTAtcgtc                    >  2:639816/1‑149 (MQ=255)                                                                                                                             cATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTACCTCTATCGTCGAt                 >  2:187066/1‑149 (MQ=255)                                                                                                                             cATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTACCTCAATCGTCGAt                 >  2:451960/1‑149 (MQ=255)                                                                                                                             cATCCGGCACCAGCGGGTACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTACCTCTAtc                       <  1:24303/143‑1 (MQ=255)                                                                                                                                 cGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACCCTGACCGCGCTATTGCTACCTCTATCGTCGATGCCg             >  2:109792/1‑149 (MQ=255)                                                                                                                                 cGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCTCGCTATTGCTACATCTATCGTCGATGCCg             <  2:446477/149‑1 (MQ=255)                                                                                                                                  ggCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGGGCTGACACCGTTTTCCGACACTGACCGCGCTATTTCTTCCTCTTtcgactttgcctt            >  2:43663/1‑139 (MQ=255)                                                                                                                                   gtaCCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGtt           <  2:276390/147‑1 (MQ=255)                                                                                                                                     aCCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGc               >  1:492811/1‑143 (MQ=255)                                                                                                                                       cAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACGCTGACCGCGCTAGTGCTACCTCTATCGTCGATGCCGTtgatg       >  2:654161/1‑149 (MQ=255)                                                                                                                                           ggTGACTACATTGACGACGAGCTGCCGGTCTCCCAGGGCGCGGCGACGCAGACTGTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGAAAc   <  2:54460/149‑1 (MQ=255)                                                                                                                                            gTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGAAACCCAAGACCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATCAAAcc  >  2:338903/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                  ATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGAAACC  >  CP009273/3338241‑3338528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.