New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3586004	NA (NA)	7 (0.080)	7/274	11.4	NA	noncoding (81/99 nt)	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	= 3586015	NA (NA)					noncoding (92/99 nt)	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

GAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3585852‑3586004 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAAACGATGAGCAATCTGTAGAGTTTGATTCAGACCTTCTATATTTTCCCGC  <  CP009273/3586015‑3585870                                                                                                                                                                                                                                                                                                             tAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCC                                                                                                                                                        <  2:1079952/148‑1  agcTGGGGTCCGCATCAGCGGGCAACTATAGAAGGTCTGAAGCAAACTCTACAGATTGCTCAGCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCT                                                                                                                                                       <  2:1000707/146‑1     TGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGAT                                                                                                                                                    <  2:1125202/149‑1      GGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTTCCAATCACCCAGTAGGCCTcgta                                                                                                                                                   >  2:192363/1‑145                     GGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTACGCCTGATGCGCTGCGCTTATCAG                                                                                                                                    <  1:951923/149‑1                       GAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATGCGCTGCGCTTATCAGGC                                                                                                                                  <  1:7051/149‑1                         AAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATGCGCTGCGCTTATCAGGCCT                                                                                                                                >  1:1362638/1‑149                                    GTCTGAATCAAACTCTACAGATTGAACATGGTTGCAGGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTTAGT                                                                                                                     <  2:305520/149‑1                                     TCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTG                                                                                                                    >  2:431790/1‑149                                        GAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCA                                                                                                                 <  2:1362638/149‑1                                              AACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGT                                                                                                           <  1:431790/149‑1                                                                                                                                                   GCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCCTCCGGCATGAAACGATGAGCAATCTGTAGAGTTTGATTCAGACCTTCTATATTTTC      <  1:1135015/149‑1                                                                                                                                                      cGATGCGCTGCCGTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAAACGATGAGCAATCTGTAGAGTTTGATTCAGACCTTCTATATTTTCCCG   <  1:471345/148‑1                                                                                                                                                      TGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAAACGATGAGCAATCTGTAGAGTTTGATTCAGACCTTCTATATTTTCCCG   <  1:837660/149‑1                                                                                                                                                      TGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAAACGATGAGCAATCTGTAGAGTTTGATTCAGACCTTCTATATTTTCCCG   >  2:1077894/1‑149                                                                                                                                                       GATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAAACGATGAGCAATCTGTAGAGTTTGATTCAGACCTTCTATATTTTCCCGC  >  1:110052/1‑149                                                                                                                                                                                                                                                                                                             GAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3585852‑3586004 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAAACGATGAGCAATCTGTAGAGTTTGATTCAGACCTTCTATATTTTCCCGC  <  CP009273/3586015‑3585870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.