New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3586004NA (NA)7 (0.080) 7/274 11.4 NA noncoding (81/99 nt) RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?CP009273 = 3586015 NA (NA)noncoding (92/99 nt) RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 114 total aligned reads displayed.

TGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCAC  >  CP009273/3585856‑3586152
                                                                                                                                                    |                                                                                                                                                    
tGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGAt                                                                                                                                                      <  2:1125202/149‑1 (MQ=255)
 ggggCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACGAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATa                                                                                                                                                     >  1:1420435/1‑149 (MQ=255)
  gggCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATaa                                                                                                                                                    <  2:1257895/149‑1 (MQ=255)
  gggCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATaa                                                                                                                                                    >  2:1376506/1‑149 (MQ=255)
   ggCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAag                                                                                                                                                   <  1:816267/149‑1 (MQ=255)
    gCACGGATAAGCGGGAAAATATAGAAGGTCTGGATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCCCCCACTAGGCCTGATaacc                                                                                                                                                  >  2:220298/1‑147 (MQ=255)
    gCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAagc                                                                                                                                                  >  2:663599/1‑149 (MQ=255)
     cgcGGATAAGCGGGAAAATATAGGAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAagcg                                                                                                                                                 <  2:827676/147‑1 (MQ=255)
        ggATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAagcgcag                                                                                                                                              >  2:929488/1‑149 (MQ=255)
         gATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAagcgcagc                                                                                                                                             <  1:381291/149‑1 (MQ=255)
              gCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATc                                                                                                                                        <  1:110052/149‑1 (MQ=255)
               cGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCa                                                                                                                                       >  1:837660/1‑149 (MQ=255)
               cGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCa                                                                                                                                       <  2:1077894/149‑1 (MQ=255)
               cGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAACGGCAGCGCATcg                                                                                                                                       >  1:471345/1‑148 (MQ=255)
                       tataGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAAttt                                                                                                                               >  1:1339088/1‑149 (MQ=255)
                         taGAAGGTCTGACTCAAACTCTACAGATTGCTCATCGCTTCATGGCGGATGCGGCGTAAACGCCTTATCAGGGCTACAAGATCGTGCAACTTCAACATATTGCCACAAGCGCAGTAGGCCTGATAAGCGCAGCGCATAAGGCAAttttc                                                                                                                             >  2:489577/1‑148 (MQ=25)
                         taGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCGACTCACCCAGTAGGCCTGATAAGAGAAGGGCATCAGGCAAttttt                                                                                                                             >  1:169273/1‑148 (MQ=255)
                          aGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTAc                                                                                                                            <  2:1278210/149‑1 (MQ=255)
                           ggaggcttGAACCAAACTCGACAGTTTGCTCGTCGTTTCCTGCCGGATTGTGCGTAAACGCCTTAACCGAACATCCAGCTGGTGCAAATCCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACa                                                                                                                           <  2:1088089/142‑1 (MQ=19)
                              ggTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACAttt                                                                                                                        <  1:1035317/149‑1 (MQ=255)
                              ggTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACAttt                                                                                                                        <  2:1070840/149‑1 (MQ=255)
                               gTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGACGTAAACGGCTTATCAGGGCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGGGCATCGGGCAAATTTACATTTg                                                                                                                       >  1:671595/1‑149 (MQ=37)
                                tCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATACGCGCAGCGCATCAGGCAATTTTACATTTGt                                                                                                                      >  1:1198995/1‑149 (MQ=255)
                                 cTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTc                                                                                                                     <  1:332392/149‑1 (MQ=255)
                                   gAATCAAACTCTACAGCATGACCATTCGTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTAAACATATTGCCACTGACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCACATTTACATTCGCCAc                                                                                                                   >  2:323352/1‑149 (MQ=18)
                                   gAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTCTCAc                                                                                                                   >  2:222540/1‑149 (MQ=255)
                                     agcAAACTCTACAGATTGTTCTTCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCt                                                                                                                 <  2:293844/147‑1 (MQ=255)
                                     agcAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCGACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCt                                                                                                                 <  1:878496/147‑1 (MQ=255)
                                      tCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTg                                                                                                                <  2:44010/149‑1 (MQ=255)
                                         aaCTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGGAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTGACCTGtct                                                                                                             >  1:669141/1‑149 (MQ=255)
                                            tctACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCaa                                                                                                          >  2:129648/1‑149 (MQ=255)
                                            tctACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCaa                                                                                                          >  1:1108618/1‑149 (MQ=255)
                                            tctACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATACTGCCCCTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCaa                                                                                                          <  1:755653/149‑1 (MQ=255)
                                             ctACGGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCaaa                                                                                                         <  1:978958/149‑1 (MQ=255)
                                                cAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGGCTGATAAGTGAAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGa                                                                                                      <  2:165696/149‑1 (MQ=255)
                                                cAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGa                                                                                                      >  1:765331/1‑149 (MQ=255)
                                                 aGATTGCTCATCGTTTCATGCCGGATGCGGCAGAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAg                                                                                                     >  2:1035318/1‑149 (MQ=255)
                                                  gATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGGCACCTGTCTCAAAGGAGt                                                                                                    >  1:696655/1‑149 (MQ=255)
                                                     tGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCtt                                                                                                 >  1:1170250/1‑149 (MQ=255)
                                                       cTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATGTTACATTTGTCACCTGTCTCAAAGGAGTCtttt                                                                                               <  1:929488/149‑1 (MQ=255)
                                                       cTCAACGTTGCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACAGATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCtttt                                                                                               <  2:238280/149‑1 (MQ=255)
                                                        tCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCATGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGAAGCCTTTTg                                                                                              >  1:1220933/1‑149 (MQ=255)
                                                         cATCGTTTCATGCCGGATGCGGCGTAACCGCCTTATCAGGCCTACGAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGa                                                                                             <  2:1178472/149‑1 (MQ=255)
                                                         cATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGt                                                                                                               <  1:846126/131‑1 (MQ=255)
                                                         cATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGt                                                                                                               >  2:846126/1‑131 (MQ=255)
                                                          aTCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACGTATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGAc                                                                                            >  1:973972/1‑149 (MQ=255)
                                                           tCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACt                                                                                           <  1:573971/149‑1 (MQ=255)
                                                             gTTTCAGGGCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTcc                                                                                         <  2:1011760/149‑1 (MQ=255)
                                                              tttCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTcaaaagactcct                                                                                        <  1:1067213/149‑12 (MQ=255)
                                                                tCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAAATCGACAGATTGCCCCTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTcaaaagactccttt                                                                                      <  1:1357986/149‑14 (MQ=25)
                                                                 cATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTat                                                                                     <  2:837660/149‑1 (MQ=255)
                                                                   tGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTatca                                                                                   >  2:481213/1‑149 (MQ=255)
                                                                     ccGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTGGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTatcaat                                                                                 >  1:1035600/1‑149 (MQ=255)
                                                                     ccGGATGCGGCGGAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACCCCCCCAGTAGGCCGGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCCGGCGCAAAGGAGTCTTTTGCCTCCCCatcaat                                                                                 >  2:160170/1‑149 (MQ=25)
                                                                      cGGATGCGGCGTAAACGCCTTATCAGGCCGACAAGCTCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTatcaatc                                                                                <  2:1159394/149‑1 (MQ=255)
                                                                       ggATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTatcaatca                                                                               <  2:590718/149‑1 (MQ=255)
                                                                        gATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTAtccatcaa                                                                              <  2:19598/149‑1 (MQ=255)
                                                                         aTGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAAc                                                                             <  2:21105/149‑1 (MQ=255)
                                                                           gcggcgTAACCGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACgt                                                                           <  2:1389868/149‑1 (MQ=255)
                                                                           gcggcgTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACgt                                                                           >  2:794617/1‑149 (MQ=255)
                                                                             ggcgTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACgtgt                                                                         <  2:907586/149‑1 (MQ=255)
                                                                              gcgTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCGGGCAATTTTACATTTGTCACCTGTCACAAAGGATTCTTTTGACTCCCTATCAATCAACGTGtt                                                                        <  1:943501/149‑1 (MQ=255)
                                                                                 tAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGGTAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTGAGAGGAGTCTTTTGACTCCCTAGCCATCAACGTGttatt                                                                     >  1:122180/1‑149 (MQ=38)
                                                                                 tAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGttatt                                                                     >  1:1283670/1‑149 (MQ=255)
                                                                                  aaaCGCCTTATCAGGCCTACAAGAGCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGctatta                                                                    <  2:1018168/149‑1 (MQ=255)
                                                                                   aaCGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACGCCCTATCAATCAACGTGTTATTAc                                                                   <  1:1081106/149‑1 (MQ=255)
                                                                                     cGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTAccc                                                                 >  1:1142891/1‑149 (MQ=255)
                                                                                     cGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTAccc                                                                 <  2:1061240/149‑1 (MQ=255)
                                                                                     cGCCTTACCAGACCTACAAGCTCGTGCAAATTTAACATATTGCCACTCACCCACTAGGCATGATAGGGGCAGCGCATCAGGCAATTTTACATTTGTCCCCTGTCTCCAAGAAGTCGTTTCACTCCCTATCAATCTACGTGTTATAAccc                                                                 >  2:79708/1‑149 (MQ=255)
                                                                                      gCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCg                                                                >  1:703288/1‑149 (MQ=255)
                                                                                       ccTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGc                                                               <  1:663599/149‑1 (MQ=255)
                                                                                            tCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTaaa                                                          <  2:1419468/149‑1 (MQ=255)
                                                                                            acAGGCCTACAAGCTCGTGCAAATTCACTATACTGCCCCTTACCCCGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCATCGTGTTATTACCCGCCTaaa                                                          <  1:489577/148‑1 (MQ=38)
                                                                                              aGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATa                                                        <  1:1035318/149‑1 (MQ=255)
                                                                                               ggCCTACAAGATCGTGCACATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATAc                                                       <  1:963159/149‑1 (MQ=255)
                                                                                               ggCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATAc                                                       >  1:1203291/1‑149 (MQ=255)
                                                                                               ggCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATAc                                                       >  2:342685/1‑149 (MQ=255)
                                                                                                   tACAAGATCGTGCAAATTCCACATCGTCCCCCTCAGCCAGGAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAGCGTGTTATTACCCGCCTAAAGACGCAc                                                   <  2:1385752/149‑1 (MQ=38)
                                                                                                   tACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGGCTAAATACGCAc                                                   >  1:186374/1‑149 (MQ=255)
                                                                                                   caatagggcGTGCAAAGACACCAGCTCGCCCCTCCCCCATTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGACATTTTTCACGTGTCTCAAAGTAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCAc                                                   <  1:192363/141‑1 (MQ=255)
                                                                                                     cAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACtt                                                 >  2:1395831/1‑149 (MQ=255)
                                                                                                     cAAGATCGTGCAAATTCAACATATTGCAACTCACCGAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACtt                                                 >  2:90155/1‑149 (MQ=255)
                                                                                                           cGTGCAAATTCAACATATTGCCCGTCACCCAGTAGGCCTGATAAGCGAAGGGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGGGTCTTTTGACTCCCTATCATTCAACGTGTTATTACCCGCCTAAATACGCACTTCTCAcc                                           <  2:237107/149‑1 (MQ=255)
                                                                                                            gTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCg                                          <  1:1092014/149‑1 (MQ=255)
                                                                                                               cAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCtt                                       >  1:736811/1‑149 (MQ=255)
                                                                                                                aaaTTCATCATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTc                                      <  2:1198995/149‑1 (MQ=255)
                                                                                                                         atatTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAg                                                                                                        >  2:1333001/1‑74 (MQ=255)
                                                                                                                         atatTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAg                                                                                                        <  1:1333001/74‑1 (MQ=255)
                                                                                                                           atTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCcagca                           <  1:1199507/149‑1 (MQ=255)
                                                                                                                             tGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCagcagc                         <  2:1122248/149‑1 (MQ=255)
                                                                                                                                         aGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTa             >  1:1279982/1‑149 (MQ=255)
                                                                                                                                             ggCCTGATAAGCGCAGCGCATCAGGCAATTTTACAGTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCgg         <  1:231247/149‑1 (MQ=255)
                                                                                                                                              gCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCCCCCGCAGCGCATCCCCCGTAACGGa        >  2:220920/1‑149 (MQ=255)
                                                                                                                                               ccTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGaa       >  2:405117/1‑149 (MQ=255)
                                                                                                                                                cTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGaaa      <  2:122180/149‑1 (MQ=255)
                                                                                                                                                 tGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGGCTTTTGACTCCCTATCAATCAACGTGTTATTCCCGGCCTAAATACGCCCTTCTCACCGCTTCATCCGCCAGCGGCGCTTCACCGGCGTCGGAAAg     >  2:880089/1‑149 (MQ=255)
                                                                                                                                                  gATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGc    >  2:87122/1‑149 (MQ=255)
                                                                                                                                                   aTAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTTTCTCAAAGGAGTCTTTTGa                                                                                             >  2:66057/1‑59 (MQ=255)
                                                                                                                                                   aTAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTTTCTCAAAGGAGTCTTTTGa                                                                                             <  1:66057/59‑1 (MQ=255)
                                                                                                                                                    tAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGGCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCAc  <  2:703288/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCAC  >  CP009273/3585856‑3586152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.