New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	15387 =	NA (NA)	6 (0.090)	6/262	NT	12.5%	noncoding (1/1345 nt)	IS186	repeat region
	?	CP009273	= 454251	42 (0.620)					intergenic (+95/‑93)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

CCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAT‑GCCGGGGC  >  CP009273/15239‑15533                                                                                                                                                     |                                                                                                                                                    ccGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGATAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCATGGGAAAAAATAGGATGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACt                                                                                                                                                     >  1:499193/1‑149 (MQ=255)   accatcaaagaagctcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTcc                                                                                                                                                   >  1:109227/15‑149 (MQ=255)       taaaaGAGGTTCTTTGATGGTGTGAAGAAGTTTTCTGACGACTTGACCCGCTACCCCCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACt                                                                                                                                                     <  2:1015629/141‑1 (MQ=255)        cAAAGGGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCTAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCATCTGTAAAGTGGCGGGGATCACTc                                                                                                                                                    <  2:749467/143‑1 (MQ=255)            gagCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGCTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAgcgc                                                                                                                                          <  1:896722/149‑1 (MQ=255)             agCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATa                                                                                                                                               >  2:997398/1‑143 (MQ=255)             agCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCt                                                                                                                                         <  1:458808/149‑1 (MQ=255)               cttgttTGATGGTGTGAAGAAGTTTTTTGGCGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTaa                                                                                                                                       <  1:1084566/149‑1 (MQ=255)               cttcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAACGCACGTTGGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTaa                                                                                                                                       <  1:625509/149‑1 (MQ=255)               cttcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTaa                                                                                                                                       <  1:809783/149‑1 (MQ=255)                  cttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGCCAGGCCTGGGTAAAAATATGGTGCGTTGAAGATAAACGAGCACCTATAAAGTAGCGGGGATCACTCACATAAGCGCTaaagt                                                                                                                                    >  1:455197/1‑146 (MQ=255)                      gATGGTGTTAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAgg                                                                                                                                <  1:84548/149‑1 (MQ=255)                       aTGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGCAAAAATAGGGTGCGTTGAAGAGATGCGAGCACCTGTAAAGTGGCGGGGCTCACCCCCATAAGCGCTAACt                                                                                                                                     >  2:1015466/1‑143 (MQ=255)                           cgtgAAGAAGTTTTTTGACGATCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTAGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAg                                                                                                                                 <  2:1034097/142‑1 (MQ=255)                               aagaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGACCGAGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGGGGTa                                                                                                                       >  1:256052/1‑149 (MQ=255)                                agaagTTTTTTGACGACCCGACCCGCTAACCTCCCCCAAAGCCCCCCAGACGACATGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt                                                                                                                      <  1:364328/149‑1 (MQ=38)                                     ttttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACgg                                                                                                                 >  1:300686/1‑148 (MQ=255)                                      tttttGCCGACCTGGCCCGCTAACCTCCCCAAGAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGAGATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt                                                                                                                      <  2:946129/143‑1 (MQ=255)                                      tttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                                                <  1:1020592/149‑1 (MQ=255)                                           gacgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata                                                                                                           <  1:500179/149‑1 (MQ=255)                                            acgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                                                <  2:218633/143‑1 (MQ=255)                                            acgacCTGACCCGCTAACCTCCCCAAAAGCCGGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                                                <  2:82380/143‑1 (MQ=255)                                              gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGCGGATCACTCCCATAAGCGCTAACTCAAGGCTTGTGGTATTACGCCTGATATGa                                                                                                        <  1:717630/149‑1 (MQ=255)                                                 cTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACATAAGGGTAGTGGTATTCAGCCTGata                                                                                                           >  2:11687/1‑143 (MQ=255)                                                   gACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa                                                                                                   >  1:660934/1‑149 (MQ=255)                                                   gACCCGCTAACCCCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTTGCGGGGATCACTCCCATAAGCGCCAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTag                                                                                                   <  1:891113/149‑2 (MQ=255)                                                      ccGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt                                                                                                <  1:747633/149‑1 (MQ=255)                                                        gCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                                    <  2:543965/143‑1 (MQ=255)                                                          tAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc                                                                                                  >  2:846655/1‑143 (MQ=255)                                                          tAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg                                                                                            <  1:278479/149‑1 (MQ=255)                                                               tCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa                                                                                       <  1:998566/149‑1 (MQ=255)                                                               tCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGAATGTGGTATTACCCCTTATCTGAACTACCGTGCCGATGaa                                                                                       >  1:768241/1‑149 (MQ=38)                                                                 cccAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTTGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCctgatctgatatggcatgccta                                                                                           <  2:864197/143‑13 (MQ=38)                                                                 cccAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt                                                                                     >  1:44151/1‑149 (MQ=255)                                                                  ccAAAAGCCTGCCCGTGGGCAGGGCGGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGGTCTGGTTTAACGTGCCGAt                                                                                          >  2:773417/1‑143 (MQ=37)                                                                    aaaaGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                                                  <  1:318214/149‑1 (MQ=255)                                                                    aaaaGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                                                  <  1:929464/149‑1 (MQ=255)                                                                         gcTGCCCGTGGGTAGGCCTGGGTAAAGATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCTCTCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGGATTAc                                                                                   <  2:441739/142‑1 (MQ=25)                                                                         ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACGTGCCGATGAATTAc                                                                                   >  2:1062108/1‑143 (MQ=255)                                                                         ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAGCGTTCCCATGGATTACTCTCAc                                                                             >  1:295958/1‑149 (MQ=255)                                                                          cTGCCCGTGGCCAGGCCAGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATCTGATTTAACGTGCCGATGAATTAct                                                                                  >  2:841894/1‑143 (MQ=255)                                                                               cGTGCGCAGGCGTGGGTAAAAAGAGGGTGCGGTGAAGATACGCGAGCACCTGGAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                       <  1:388604/149‑1 (MQ=21)                                                                                   ggCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGt                                                                   >  1:1045517/1‑149 (MQ=255)                                                                                     cAGGCTTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                       <  2:1030611/143‑1 (MQ=255)                                                                                       ggCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTg                                                                     <  2:323933/143‑1 (MQ=255)                                                                                                aaaaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                                      <  1:734791/149‑1 (MQ=255)                                                                                                 aaatTAGGGTGCGTTGAAGATATGCGAGCATCTGTAAAGTGGCGGGGATCATTCCCATAAGCGCTAACTTAAGGGTTGGGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGcc                                                     <  1:337532/149‑1 (MQ=255)                                                                                                   aaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTCTTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCa                                                   >  1:1231383/1‑149 (MQ=255)                                                                                                          tGCGTTGAAGATATGCGAGCAACTGTAAAGTGGCGGGGATCACTCCCATAAGCGGTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                            <  1:261841/149‑1 (MQ=255)                                                                                                              ttGAAGATATGCGGGCACCTGTAAGGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                              <  2:94490/143‑1 (MQ=255)                                                                                                              ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACCCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                              >  2:196616/1‑143 (MQ=255)                                                                                                                 aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACCTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCg                                     <  1:344761/149‑1 (MQ=255)                                                                                                                      atGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaagaa                                >  1:822095/1‑149 (MQ=255)                                                                                                                       tGCGAGGACCTGTAACGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCg                                     <  2:884475/143‑1 (MQ=255)                                                                                                                         cGAGCACCTGTAAAGTGGCGGGGGTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGGTATGATTTAACGTGCCGATGAATTACTCGCACGATAACTGGTCAGCAATTCTGGCGCATCGCTGTCAGCCCgaa                                   >  2:392004/1‑143 (MQ=17)                                                                                                                          gAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCAATATTGGTAAGCCCGAAGAACTgg                            <  1:966839/149‑1 (MQ=255)                                                                                                                             cACCTGTAAACTGGCGGGGACCCCTCCCACAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa                         <  1:1069778/149‑1 (MQ=255)                                                                                                                              aCCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                              <  2:484567/143‑1 (MQ=255)                                                                                                                              aCCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAc                        <  1:588577/149‑1 (MQ=255)                                                                                                                              aCCTGTAAAGTGGCGGGGAGCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                              <  2:257897/143‑1 (MQ=255)                                                                                                                               ccTGTAAAGTGGTGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACt                       <  1:1298033/149‑1 (MQ=255)                                                                                                                               ccTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCAATGAATTACTCTCACGATAACTGGTCAGCAATTATGGCCCATATTGGTAAGCCCGAAGAAcgg                             >  2:28728/1‑141 (MQ=255)                                                                                                                                cTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGGTACtt                      >  1:15304/1‑149 (MQ=255)                                                                                                                                   tAAAGTGGCGGGGGTCACTCACATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTTGTATGCCCGAAGAACTGGATa                         <  2:132465/143‑1 (MQ=255)                                                                                                                                      aGTGGGGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATCCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACtt                      <  2:26379/143‑1 (MQ=255)                                                                                                                                      aGTGGCGGGGATCCCTCCCATAAGCGCTAACTTAAGGGTTGTGGTTTTAAGCAAGATAAGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTTGATACTTCGGCAc                <  1:889779/149‑1 (MQ=11)                                                                                                                                      aGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCAc                <  1:154019/149‑1 (MQ=38)                                                                                                                                          gCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGc                  >  2:43989/1‑143 (MQ=37)                                                                                                                                          gCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTaa            >  1:197531/1‑149 (MQ=37)                                                                                                                                                  atcTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAT‑GCCgggg   <  1:184230/147‑1 (MQ=11)                                                                                                                                                    cTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGTCGCGGAATCGCCgggct  >  1:614625/1‑147 (MQ=11)                                                                                                                                                     |                                                                                                                                                    CCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAT‑GCCGGGGC  >  CP009273/15239‑15533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.