| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 15387 = | NA (NA) | 6 (0.090) | 6/262 | NT | 12.5% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | CP009273 | = 454251 | 42 (0.620) | intergenic (+95/‑93) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La | |||||
TGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGT > CP009273/454110‑454399 | tGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCat < 1:96261/149‑1 (MQ=255) tGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTACCCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCAtata < 1:1181950/149‑1 (MQ=255) tGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCAtata > 1:1186300/1‑149 (MQ=255) ggtggccattggtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACt > 1:989614‑M1/129‑149 (MQ=255) tttATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTg > 1:1134515/1‑149 (MQ=255) cattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACt > 2:507222‑M1/123‑143 (MQ=255) cattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACt < 2:1069526‑M1/21‑1 (MQ=255) gCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATACCCATCTACTg > 2:762985/1‑143 (MQ=255) attcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc < 1:1291079‑M1/28‑1 (MQ=255) attcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc < 1:227236‑M1/28‑1 (MQ=255) aaGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCTTCTATTTTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTggc > 2:752406/1‑141 (MQ=255) ccGGAACCGCAACAGGCATCTGGTGAATAATTAACCTTTCCCATACAATTAGTAAAAAAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTa < 2:1007946/143‑1 (MQ=255) ggAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTCGAATGTGGGGGAAACATCCCCCTATACTGACGTACATGTTat > 1:711426/1‑148 (MQ=255) gcAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGTGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTTGGGGAGACATCACCATATACAGACGtcaatggtac > 2:232724/1‑134 (MQ=255) cAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAAt < 2:434908/143‑1 (MQ=255) ttacatcctacaaaacgcaattgtagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATg > 2:648705‑M1/103‑143 (MQ=255) cctgtggtagagtatTAACCAGTCCCATACATTTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGc < 2:700725/130‑1 (MQ=255) ggcgAATAATTGACCATGCCCATACAATTAGTTAACCAAAGAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGaa < 2:943817/140‑1 (MQ=255) ggTGAATAGTTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGaa < 2:927054/143‑1 (MQ=255) ctacaaaacgcaattgaagaacgcaaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAg < 1:752368‑M1/54‑1 (MQ=255) gTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCTGGAAg > 2:37276/1‑143 (MQ=255) gAATAATTAATCAATCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATgtctttaatca < 2:469426/143‑11 (MQ=255) gAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGGAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGtag > 1:420183/1‑147 (MQ=255) gAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGca < 2:651692/143‑1 (MQ=255) gcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCAt > 1:57251‑M1/87‑149 (MQ=255) aTTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGAtt > 1:257857/1‑149 (MQ=255) aTTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGGCAt > 2:538469/1‑143 (MQ=255) aTACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTGATATAATTACCTgc > 1:170819/1‑148 (MQ=255) aCAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTAc > 2:425610/1‑143 (MQ=255) aCAATTAGTTAACCAAAAAGGGGGGATTTTATCGCCCCGTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACAtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattact > 1:200746‑M2/1‑81 (MQ=255) cAATTAGTTAAAAAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACAtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaa > 2:1103944‑M2/1‑80 (MQ=255) ttAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACATTCGTGTCATCTGCTTACCTgg > 2:65908/1‑143 (MQ=255) gcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCggaga < 1:1057206‑M1/81‑3 (MQ=255) tAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGc < 2:955232/143‑1 (MQ=255) aGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCCAAGTCGTGTCACCTGATTACCTGGCg > 2:375456/1‑143 (MQ=255) tcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaaggtagcgcttatGGGGAAACATCCCCATATACTGAAGTCCATGTTAATAGATGACGTGACGAACAGTCGCGTCATCTGATTACCTTGCgg < 2:1082522‑M1/78‑1 (MQ=255) ttAACCAAAAAGGGGGGATTTTATCTCCCATTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGa > 2:722083/1‑143 (MQ=255) tAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTaaa < 1:553320/149‑1 (MQ=255) ccAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTTTTTTTTTTTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGAGACAGCTGATTACCTGGCGGAAAtt > 2:58412/1‑143 (MQ=255) gggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGct < 1:664194/149‑1 (MQ=255) gggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGct < 1:489767/149‑1 (MQ=255) aTCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAAt < 1:1215737/149‑1 (MQ=255) tctcCGCTTTAGTTGTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGGCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTa < 2:946893/143‑1 (MQ=255) tctcCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATc > 1:838138/1‑149 (MQ=255) ttcttcagatggttcaacccttacgttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATGGATGGCGTGACGCACAGTCGCGTCATCTGATTAGCTTGAGGAAACGAAACTaagagagagccgcatgaat < 2:29992‑M1/107‑10 (MQ=255) ccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAg > 1:202163/1‑149 (MQ=255) ttAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGt > 1:741963/1‑149 (MQ=255) tAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATATTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGtt < 1:878583/149‑1 (MQ=255) aaTTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGa < 2:816813/143‑1 (MQ=255) aaTTTGTGCGCTATGTTCGGCGTTGAATGTGGGGGAAGCAGCCCCATATCCTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTACGAGAGAGCTCTATGAATCCTGa < 2:16434/143‑1 (MQ=255) tctATTCTCGGCGTTGAATGTGGGGGAAGCAtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagga < 1:782148‑M2/149‑119 (MQ=255) ctcGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAAt > 1:218354/1‑149 (MQ=255) tcGCCGTTGAATGCGGGCGAACCATCCCCTTCTACCGACGTACATGTTAAGAGATGGCGGGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATc < 1:337238/149‑1 (MQ=255) ggCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGACATccc > 1:20962/1‑149 (MQ=255) gCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGaa > 2:1020504/1‑143 (MQ=255) gAATGTGGGGGAAACAtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatacttcggca < 1:1136575‑M2/149‑134 (MQ=255) aaTGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCCTTGAAATcccc > 2:928142/1‑143 (MQ=255) aTGTGGGGGAAACAtcccataagcgctaacttaagggttgtggtattaagactgatatgctataacgtgtcgatgagttactctcacgataactggtcagcaattctggcccatattggttagcccgaagaactggatacttc < 2:269979‑M2/143‑130 (MQ=255) gtgGGGGAAACAtcccatcagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatactccggcacgta < 1:576143‑M2/149‑138 (MQ=255) GGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTg < 1:756215‑M1/149‑1 (MQ=255) GGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACGGGCTTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCGGAACGCATTGAAATCCCCGTATGGCCGCTgc < 1:1016370‑M1/149‑1 (MQ=255) gAAACATCGCCATATACTGACGTACATGTTNATAGATGGCGTGAAGCACAGTCGTGTCATCTGATGACCTGGCGGAAATTAAATTAAGAGAGANCTCTATGAATCCTGCGCGTTCTGAACGGATTGAATTCCCCGTATTGCCg < 2:598472/143‑1 (MQ=255) atcccataagcgctaacttaagggttgtgttattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatacttcggcacgtaatgccggggct > 1:507895‑M2/1‑1 (MQ=255) | TGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGT > CP009273/454110‑454399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |