mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,208,007 | 0 | T | G | 20.2% | 421.7 / 22.3 | 200 | S534S (TCT→TCG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| Marginal new junction evidence (lowest skew 10 of 167 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1203261 | 159 (0.980) | 32 (0.220) | 27/264 | 9.7 | 19.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 128 (0.880) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1203246 = | 163 (1.000) | 24 (0.170) | 20/264 | 12.3 | 14.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 133 (0.920) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 4532499 = | 149 (0.920) | 17 (0.110) | 17/278 | 14.4 | 10.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 143 (0.940) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 224595 | NA (NA) | 28 (0.180) | 14/288 | 16.4 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 224611 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 3641487 | 127 (0.780) | 13 (0.090) | 12/274 | 16.8 | 10.1% | intergenic (‑339/‑401) | dinQ/arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| ? | CP009273 | = 3641492 | 114 (0.760) | intergenic (‑344/‑396) | dinQ/arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor | |||||
| * | ? | CP009273 | = 4532507 | 154 (0.950) | 16 (0.100) | 12/278 | 17.0 | 10.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 141 (0.920) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 3939413 | 12 (0.070) | 28 (0.180) | 13/288 | 17.0 | 70.6% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 3939429 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | CP009273 | = 221768 | NA (NA) | 20 (0.130) | 11/286 | 18.1 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 221780 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 1092919 | 54 (0.330) | 22 (0.140) | 10/280 | 18.4 | 29.9% | intergenic (+634/+102) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092923 | 52 (0.340) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | = 1092750 | 65 (0.400) | 22 (0.140) | 10/280 | 18.4 | 29.2% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092911 | 45 (0.290) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||