mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,422,037 | 0 | A | T | 23.8% | 13.6 / 10.7 | 21 | noncoding (85/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | CP009273 | 3,422,038 | 0 | A | T | 23.8% | 15.3 / 10.3 | 21 | noncoding (84/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| Marginal new junction evidence (lowest skew 10 of 49 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 53 (0.810) | 19 (0.330) | 19/260 | 3.2 | 31.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 36 (0.620) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 53 (0.810) | 10 (0.170) | 10/260 | 5.9 | 19.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 36 (0.620) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 2721250 = | NA (NA) | 16 (0.250) | 10/280 | 6.4 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 3938338 | NA (NA) | 15 (0.240) | 9/280 | 6.9 | 30.9% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4032171 | 35 (0.530) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 223539 | 40 (0.610) | 15 (0.240) | 9/280 | 6.9 | 28.1% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 3524029 | 75 (1.140) | 7 (0.110) | 6/272 | 8.1 | 9.2% | intergenic (+18/+45) | hslO/yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| ? | CP009273 | = 3524033 | 69 (1.130) | intergenic (+22/+41) | hslO/yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein | |||||
| * | ? | CP009273 | = 4532507 | 54 (0.820) | 5 (0.080) | 5/274 | 8.8 | 8.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 65 (1.060) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 1933356 = | NA (NA) | 6 (0.100) | 5/276 | 8.8 | NA | noncoding (1/30 nt) | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1933386 = | NA (NA) | intergenic (+38/+93) | pykA/lpxM | pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | CP009273 | 277607 = | 73 (1.110) | 5 (0.080) | 5/276 | 8.8 | 7.0% | coding (88/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 277634 = | 64 (1.030) | coding (61/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 2060065 | 28 (0.430) | 5 (0.080) | 5/282 | 9.0 | 15.6% | noncoding (770/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2060178 | NA (NA) | noncoding (657/1195 nt) | IS5 | repeat region | |||||