New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4253154	50 (1.150)	4 (0.100)	4/274	6.0	7.8%	intergenic (+144/+22)	pspG/qorA	phage shock protein G/quinone oxidoreductase, NADPH‑dependent
	?	CP009273	= 4253159	48 (1.180)					intergenic (+149/+17)	pspG/qorA	phage shock protein G/quinone oxidoreductase, NADPH‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCA  >  CP009273/4253008‑4253299                                                                                                                                                   |                                                                                                                                                  tAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTCCTGCTCCCTACATACAGCCGAACTATAAAAAGAAAGGGCTGCCCa                                                                                                                                                 >  2:323538/1‑149 (MQ=255)   aGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAGTAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAgg                                                                                                                                               >  2:255908/1‑149 (MQ=255)           tgCGGATGGACACAACCTAAGTTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACATATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTccacctggg                                                                                                                                            <  1:137053/144‑8 (MQ=255)             cGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAGGCCCt                                                                                                                                     >  2:335102/1‑149 (MQ=255)                    tCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCtt                                                                                                                              >  2:604516/1‑149 (MQ=255)                     cacaACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCttt                                                                                                                             >  2:681513/1‑149 (MQ=255)                      acaACCTAAGTTTTTATCCTTAGAACAAAATATGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCtttt                                                                                                                            <  2:19735/149‑1 (MQ=255)                             aaGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAAt                                                                                                                     >  2:294854/1‑149 (MQ=255)                              aGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATg                                                                                                                         <  1:239021/144‑1 (MQ=255)                                           aGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAAc                                                                                                       <  2:415937/149‑1 (MQ=255)                                            gAACAAAATAGGAATTGATAATCAACTCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAAcc                                                                                                      >  2:442845/1‑149 (MQ=255)                                             aaCAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTgg                                                                                                          >  1:258708/1‑144 (MQ=255)                                                   aTAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCtt                                                                                                    >  1:523533/1‑144 (MQ=255)                                                       gAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGccc                                                                                           >  2:382316/1‑149 (MQ=255)                                                            gATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCtt                                                                                      <  2:334109/149‑1 (MQ=255)                                                            gATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCGCTCTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGccc                                                                                           <  1:280401/144‑1 (MQ=255)                                                             aTAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCg                                                                                          >  1:235950/1‑144 (MQ=255)                                                                 tCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAg                                                                                 >  2:647519/1‑149 (MQ=255)                                                                    aaTCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGaac                                                                              >  2:197870/1‑148 (MQ=255)                                                                     aTCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTCTGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCa                                                                                  >  1:289115/1‑144 (MQ=255)                                                                     aTCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAAtc                                                                             <  2:355506/149‑1 (MQ=255)                                                                      tCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTcccg                                                                                 >  1:30597/1‑142 (MQ=255)                                                                       cTGTCACTATTGCGCCTCTAACAGATTCATCGGGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAAtctc                                                                           <  2:89701/149‑1 (MQ=255)                                                                        tGTCACTATCGCGCCTCTAACCGATTCCACGCGATAAACAATCCATTCGAGCAAACTATAAAAAACAAGACATTGCCAGTTGGAATACTGAGTGCCGTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCa                                                                          <  2:730485/149‑1 (MQ=255)                                                                          tCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAAtc                                                                             <  1:515997/144‑1 (MQ=255)                                                                            aCTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATAAAAGCGGACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCACGAAtctc                                                                           >  1:113700/1‑144 (MQ=255)                                                                            aCTAGTGCGCCTCTAACAGATTCAGCGTGCTGTACCCTACATACAGCCGAACTATGAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAAtctc                                                                           <  1:532323/144‑1 (MQ=255)                                                                             cTATTGCGCCTCTAACAGATTCATCGTGCCGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATgcgc                                                                     <  2:199826/149‑1 (MQ=255)                                                                                 tGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTAGAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATgcg                                                                      <  1:120140/144‑1 (MQ=255)                                                                                    gcCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTgc                                                              <  2:60789/149‑1 (MQ=255)                                                                                      ctctAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCCTacgcgccc                                                                 >  1:412717/1‑140 (MQ=255)                                                                                         tagcAGGTTCCTCGTGCTGAACCCGACATACAGGCGAACTATAAAGAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGAATATTGGTTGGCCAGAATCTCATGCGCACGCTgc                                                              <  1:147977/141‑1 (MQ=255)                                                                                                  ctttttGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTc                                                     <  1:472656/139‑1 (MQ=255)                                                                                                        gCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCTTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATAttt                                          <  2:338985/149‑1 (MQ=255)                                                                                                        gCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCAAGTCCTTCAGGCGCACGCTGCGCATCCTTCAGCGGATAttt                                          <  2:733950/149‑1 (MQ=255)                                                                                                               ccTACAGTCAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTct                                        <  1:53667/144‑1 (MQ=255)                                                                                                                  acatacaGCCGAACTATAAAAAGAAAGGGCTTCCACGGTGGTAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCg                                <  2:504521/149‑1 (MQ=255)                                                                                                                    atacaGCCGAACTCTAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGc                              <  2:300830/149‑1 (MQ=255)                                                                                                                    atacaGCCGAACTATAAAAAGAAAGCGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGc                              <  2:572910/149‑1 (MQ=255)                                                                                                                     tacaGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCg                             <  2:6921/149‑1 (MQ=255)                                                                                                                       caGCCGGACTATGAAAAGCAAGGTCTTCCCAGGTGGCCGCGCTCCTTCTTTTATGGAATCAGCAGGCTGGAACCCTGCGTCGCCCGGCTTTCCAGAGTCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCg                                <  1:306564/144‑1 (MQ=255)                                                                                                                        aGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAACGGATATTTCTGCTGCCCgg                               >  1:264090/1‑144 (MQ=255)                                                                                                                          ccGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATc                        >  2:666086/1‑149 (MQ=255)                                                                                                                             aaCTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGAc                     >  2:518780/1‑149 (MQ=255)                                                                                                                                   aaaaaGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATCTCTGCTGCTCGGCGACATCGACCTTAAt               <  2:398884/149‑1 (MQ=255)                                                                                                                                    aaaaGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCt                   >  1:615215/1‑144 (MQ=255)                                                                                                                                             ggCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTg     >  2:492013/1‑149 (MQ=255)                                                                                                                                              gCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCCGCGGATATTTCTGCTGCTCGGCGACCTCGACCTTAATCACAcc         >  1:550558/1‑144 (MQ=255)                                                                                                                                               cTTCCCAGGTGGATGCCCTATTTCTTTTATGGAATCAGCAGGCTGGCACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGc   <  2:613399/149‑1 (MQ=255)                                                                                                                                                ttCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCa  >  2:394628/1‑149 (MQ=255)                                                                                                                                                   ccAGGTGGAAGCCCTATTTCGTTTATGGAATCAGCAGGCTGGAACCTGGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTgg    <  1:91605/144‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  TAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCA  >  CP009273/4253008‑4253299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.