New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4253154	50 (1.150)	4 (0.100)	4/274	6.0	7.8%	intergenic (+144/+22)	pspG/qorA	phage shock protein G/quinone oxidoreductase, NADPH‑dependent
	?	CP009273	= 4253159	48 (1.180)					intergenic (+149/+17)	pspG/qorA	phage shock protein G/quinone oxidoreductase, NADPH‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAA  >  CP009273/4253020‑4253305                                                                                                                                            |                                                                                                                                                   cGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAGGCCCt                                                                                                                                           >  2:335102/1‑149 (MQ=255)        tCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCtt                                                                                                                                    >  2:604516/1‑149 (MQ=255)         cacaACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCttt                                                                                                                                   >  2:681513/1‑149 (MQ=255)          acaACCTAAGTTTTTATCCTTAGAACAAAATATGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCtttt                                                                                                                                  <  2:19735/149‑1 (MQ=255)                 aaGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAAt                                                                                                                           >  2:294854/1‑149 (MQ=255)                  aGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATg                                                                                                                               <  1:239021/144‑1 (MQ=255)                               aGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAAc                                                                                                             <  2:415937/149‑1 (MQ=255)                                gAACAAAATAGGAATTGATAATCAACTCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAAcc                                                                                                            >  2:442845/1‑149 (MQ=255)                                 aaCAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTgg                                                                                                                >  1:258708/1‑144 (MQ=255)                                       aTAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCtt                                                                                                          >  1:523533/1‑144 (MQ=255)                                           gAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGccc                                                                                                 >  2:382316/1‑149 (MQ=255)                                                gATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCtt                                                                                            <  2:334109/149‑1 (MQ=255)                                                gATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCGCTCTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGccc                                                                                                 <  1:280401/144‑1 (MQ=255)                                                 aTAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCg                                                                                                >  1:235950/1‑144 (MQ=255)                                                     tCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAg                                                                                       >  2:647519/1‑149 (MQ=255)                                                        aaTCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGaac                                                                                    >  2:197870/1‑148 (MQ=255)                                                         aTCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTCTGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCa                                                                                        >  1:289115/1‑144 (MQ=255)                                                         aTCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAAtc                                                                                   <  2:355506/149‑1 (MQ=255)                                                          tCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTcccg                                                                                       >  1:30597/1‑142 (MQ=255)                                                           cTGTCACTATTGCGCCTCTAACAGATTCATCGGGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAAtctc                                                                                 <  2:89701/149‑1 (MQ=255)                                                            tGTCACTATCGCGCCTCTAACCGATTCCACGCGATAAACAATCCATTCGAGCAAACTATAAAAAACAAGACATTGCCAGTTGGAATACTGAGTGCCGTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCa                                                                                <  2:730485/149‑1 (MQ=255)                                                              tCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAAtc                                                                                   <  1:515997/144‑1 (MQ=255)                                                                aCTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATAAAAGCGGACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCACGAAtctc                                                                                 >  1:113700/1‑144 (MQ=255)                                                                aCTAGTGCGCCTCTAACAGATTCAGCGTGCTGTACCCTACATACAGCCGAACTATGAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAAtctc                                                                                 <  1:532323/144‑1 (MQ=255)                                                                 cTATTGCGCCTCTAACAGATTCATCGTGCCGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATgcgc                                                                           <  2:199826/149‑1 (MQ=255)                                                                     tGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTAGAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATgcg                                                                            <  1:120140/144‑1 (MQ=255)                                                                        gcCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTgc                                                                    <  2:60789/149‑1 (MQ=255)                                                                          ctctAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCCTacgcgccc                                                                       >  1:412717/1‑140 (MQ=255)                                                                             tagcAGGTTCCTCGTGCTGAACCCGACATACAGGCGAACTATAAAGAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGAATATTGGTTGGCCAGAATCTCATGCGCACGCTgc                                                                    <  1:147977/141‑1 (MQ=255)                                                                                      ctttttGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTc                                                           <  1:472656/139‑1 (MQ=255)                                                                                            gCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCTTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATAttt                                                <  2:338985/149‑1 (MQ=255)                                                                                            gCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCAAGTCCTTCAGGCGCACGCTGCGCATCCTTCAGCGGATAttt                                                <  2:733950/149‑1 (MQ=255)                                                                                                   ccTACAGTCAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTct                                              <  1:53667/144‑1 (MQ=255)                                                                                                      acatacaGCCGAACTATAAAAAGAAAGGGCTTCCACGGTGGTAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCg                                      <  2:504521/149‑1 (MQ=255)                                                                                                        atacaGCCGAACTCTAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGc                                    <  2:300830/149‑1 (MQ=255)                                                                                                        atacaGCCGAACTATAAAAAGAAAGCGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGc                                    <  2:572910/149‑1 (MQ=255)                                                                                                         tacaGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCg                                   <  2:6921/149‑1 (MQ=255)                                                                                                           caGCCGGACTATGAAAAGCAAGGTCTTCCCAGGTGGCCGCGCTCCTTCTTTTATGGAATCAGCAGGCTGGAACCCTGCGTCGCCCGGCTTTCCAGAGTCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCg                                      <  1:306564/144‑1 (MQ=255)                                                                                                            aGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAACGGATATTTCTGCTGCCCgg                                     >  1:264090/1‑144 (MQ=255)                                                                                                              ccGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATc                              >  2:666086/1‑149 (MQ=255)                                                                                                                 aaCTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGAc                           >  2:518780/1‑149 (MQ=255)                                                                                                                       aaaaaGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATCTCTGCTGCTCGGCGACATCGACCTTAAt                     <  2:398884/149‑1 (MQ=255)                                                                                                                        aaaaGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCt                         >  1:615215/1‑144 (MQ=255)                                                                                                                                 ggCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTg           >  2:492013/1‑149 (MQ=255)                                                                                                                                  gCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCCGCGGATATTTCTGCTGCTCGGCGACCTCGACCTTAATCACAcc               >  1:550558/1‑144 (MQ=255)                                                                                                                                   cTTCCCAGGTGGATGCCCTATTTCTTTTATGGAATCAGCAGGCTGGCACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGc         <  2:613399/149‑1 (MQ=255)                                                                                                                                    ttCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCa        >  2:394628/1‑149 (MQ=255)                                                                                                                                       ccAGGTGGAAGCCCTATTTCGTTTATGGAATCAGCAGGCTGGAACCTGGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTgg          <  1:91605/144‑1 (MQ=255)                                                                                                                                          ggTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCaaa  <  2:287280/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                   CGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAA  >  CP009273/4253020‑4253305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.